Skip Navigation


Bioinformatics Advance Access originally published online on August 26, 2008
Bioinformatics 2008 24(21):2561-2563; doi:10.1093/bioinformatics/btn441
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow All Versions of this Article:
24/21/2561    most recent
btn441v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (1)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Pirooznia, M.
Right arrow Articles by Deng, Y.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Pirooznia, M.
Right arrow Articles by Deng, Y.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

GOfetcher: a database with complex searching facility for gene ontology

Mehdi Pirooznia 1,*, Tanwir Habib 1, Edward J. Perkins 2 and Youping Deng 1,*

1Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA

*To whom correspondence should be addressed.


  Abstract

Motivation: An important contribution to the Gene Ontology (GO) project is to develop tools that facilitate the creation, maintenance and use of ontologies. Several tools have been created for communicating and using the GO project. However, a limitation with most of these tools is that they suffer from lack of a comprehensive search facility. We developed a web application, GOfetcher, with a very comprehensive search facility for the GO project and a variety of output formats for the results. GOfetcher has three different levels for searching the GO: ‘Quick Search’, ‘Advanced Search’ and ‘Upload Files’ for searching. The application includes a unique search option which generates gene information given a nucleotide or protein accession number which can then be used in generating GO information. The output data in GOfetcher can be saved into several different formats; including spreadsheet, comma-separated values and the extensible markup language (XML) format. The database is available at http://mcbc.usm.edu/gofetcher/.

Contact: youping.deng{at}usm.edu or mehdi.pirooznia{at}usm.edu

Associate Editor: Dmitrij Frishman

Received on March 4, 2008; revised on May 29, 2008; accepted on August 18, 2008

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 DatabaseHome page
R. P. Huntley, D. Binns, E. Dimmer, D. Barrell, C. O'Donovan, and R. Apweiler
QuickGO: a user tutorial for the web-based Gene Ontology browser
Database, September 30, 2009; 2009(0): bap010 - bap010.
[Abstract] [Full Text] [PDF]

Home page
 Toxicol SciHome page
K. A. Gust, M. Pirooznia, M. J. Quinn Jr, M. S. Johnson, L. Escalon, K. J. Indest, X. Guan, J. Clarke, Y. Deng, P. Gong, et al.
Neurotoxicogenomic Investigations to Assess Mechanisms of Action of the Munitions Constituents RDX and 2,6-DNT in Northern Bobwhite (Colinus virginianus)
Toxicol. Sci., July 1, 2009; 110(1): 168 - 180.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.