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Bioinformatics Advance Access originally published online on October 10, 2008
Bioinformatics 2008 24(23):2778-2779; doi:10.1093/bioinformatics/btn533
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

POPE—a tool to aid high-throughput phylogenetic analysis

Thorhildur Juliusdottir *, Fredrik Pettersson and Richard R. Copley

Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford, OX3 7BN, UK

*To whom correspondence should be addressed.


  Abstract

Summary: POPE (Phylogeny, Ortholog and Paralog Extractor) provides an integrated platform for automatic ortholog identification. Intermediate steps can be visualized, modified and analyzed in order to assess and improve the underlying quality of orthology and paralogy assignments.

Availability: POPE is available for download from the website: http://www.well.ox.ac.uk/~tota/pope.

Contact: tota{at}well.ox.ac.uk

Associate Editor: Martin Bishop

Received on July 18, 2008; revised on October 8, 2008; accepted on October 8, 2008

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