Skip Navigation


Bioinformatics Advance Access originally published online on January 2, 2008
Bioinformatics 2008 24(3):426-427; doi:10.1093/bioinformatics/btm622
This Article
Right arrow Full Text Freely available
Right arrow FREE Full Text (Print PDF) Freely available
Right arrowOA All Versions of this Article:
24/3/426    most recent
btm622v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (2)
Google Scholar
Right arrow Articles by Sippl, M. J.
Right arrow Articles by Wiederstein, M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Sippl, M. J.
Right arrow Articles by Wiederstein, M.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

A note on difficult structure alignment problems

Manfred J. Sippl * and Markus Wiederstein

Center of Applied Molecular Engineering, Division of Bioinformatics, Department of Molecular Biology, University of Salzburg, Hellbrunnerstr. 34, 5020 Salzburg, Austria

*To whom correspondence should be addressed.


  Abstract

Summary: Progress in structural biology depends on several key technologies. In particular tools for alignment and superposition of protein structures are indispensable. Here we describe the use of the TopMatch web service, an effective computational tool for protein structure alignment, for the visualization of structural similarities, and for highlighting relationships found in protein classifications. We provide several instructive examples.

Availability: TopMatch is available as a public web service at http://services.came.sbg.ac.at

Contact: sippl{at}came.sbg.ac.at

Associate Editor: Burkhard Rost

Received on November 23, 2007; revised on December 12, 2007; accepted on December 13, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
M. J. Sippl, S. J. Suhrer, M. Gruber, and M. Wiederstein
A discrete view on fold space
Bioinformatics, March 15, 2008; 24(6): 870 - 871.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. J. Sippl
On distance and similarity in fold space
Bioinformatics, March 15, 2008; 24(6): 872 - 873.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.