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Bioinformatics Advance Access originally published online on January 28, 2008
Bioinformatics 2008 24(5):715-716; doi:10.1093/bioinformatics/btm619
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© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

Stephen A. Smith 1,* and Casey W. Dunn 2

1Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520 and 2Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA

*To whom correspondence should be addressed.


  Abstract

Summary: Phyutility provides a set of phyloinformatics tools for summarizing and manipulating phylogenetic trees, manipulating molecular data and retrieving data from NCBI. Its simple command-line interface allows for easy integration into scripted analyses, and is able to handle large datasets with an integrated database.

Availability: Phyutility, including source code, documentation, examples, and executables, is available at http://code.google.com/p/phyutility

Contact: stephen.smith{at}yale.edu

Associate Editor: Keith Crandall

Received on October 10, 2007; revised on November 19, 2007; accepted on December 10, 2007

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