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Bioinformatics Advance Access originally published online on February 5, 2008
Bioinformatics 2008 24(6):880-881; doi:10.1093/bioinformatics/btn051
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© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

LibSBML: an API Library for SBML

Benjamin J. Bornstein 1,{dagger}, Sarah M. Keating 2,*,{dagger}, Akiya Jouraku 3 and Michael Hucka 2

1NASA Jet Propulsion Laboratory, 2Biological Network Modeling Center, California Institute of Technology, Pasadena, CA, USA and 3School of Fundamental Science and Technology, Keio University, Yokohama, Japan

*To whom correspondence should be addressed.


  Abstract

Summary: LibSBML is an application programming interface library for reading, writing, manipulating and validating content expressed in the Systems Biology Markup Language (SBML) format. It is written in ISO C and C++, provides language bindings for Common Lisp, Java, Python, Perl, MATLAB and Octave, and includes many features that facilitate adoption and use of both SBML and the library. Developers can embed libSBML in their applications, saving themselves the work of implementing their own SBML parsing, manipulation and validation software.

Availability: LibSBML 3 was released in August 2007. Source code, binaries and documentation are freely available under LGPL open-source terms from http://sbml.org/software/libsbml.

Contact: sbml-team{at}caltech.edu

Associate Editor: Olga Troyanskaya

{dagger}The first two authors should be regarded as First Author.

Received on January 13, 2008; revised on January 13, 2008; accepted on January 31, 2008

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