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Bioinformatics Advance Access originally published online on June 10, 2009
Bioinformatics 2009 25(16):2071-2073; doi:10.1093/bioinformatics/btp356
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reordering contigs of draft genomes using the Mauve Aligner

Anna I. Rissman 1,*, Bob Mau 1, Bryan S. Biehl 1, Aaron E. Darling 2, Jeremy D. Glasner 1 and Nicole T. Perna 1

1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616

*To whom correspondence should be addressed.


  Abstract

Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results.

Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve.

Contact: rissman{at}wisc.edu

Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu

Associate Editor: Dmitrij Frishman

Received on January 7, 2009; revised on May 12, 2009; accepted on June 3, 2009

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