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Bioinformatics Advance Access originally published online on November 27, 2008
Bioinformatics 2009 25(2):279-280; doi:10.1093/bioinformatics/btn617
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB

Tim F. Rayner 1,*, Faisal Ibne Rezwan 2, Margus Lukk 1, Xiangqun Zheng Bradley 1, Anna Farne 1, Ele Holloway 1, James Malone 1, Eleanor Williams 1 and Helen Parkinson 1

1EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD and 2University of Hertfordshire, College Lane Campus, Hatfield, Hertforshire AL10 9AB, UK

*To whom correspondence should be addressed.


  Abstract

Summary: The MAGE-TAB format for microarray data representation and exchange has been proposed by the microarray community to replace the more complex MAGE-ML format. We present a suite of tools to support MAGE-TAB generation and validation, conversion between existing formats for data exchange, visualization of the experiment designs encoded by MAGE-TAB documents and the mining of such documents for semantic content.

Availability: Software is available from http://tab2mage.sourceforge.net/

Contact: tfrayner{at}gmail.com

Associate Editor: David Rocke

Received on October 7, 2008; revised on November 24, 2008; accepted on November 24, 2008

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