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Bioinformatics Advance Access originally published online on November 25, 2008
Bioinformatics 2009 25(2):288-289; doi:10.1093/bioinformatics/btn615
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

AmiGO: online access to ontology and annotation data

Seth Carbon 1,*,{dagger}, Amelia Ireland 2,{dagger}, Christopher J. Mungall 1, ShengQiang Shu 3, Brad Marshall 1, Suzanna Lewis 1, the AmiGO Hub{ddagger} and the Web Presence Working Group{ddagger}

1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA

*To whom correspondence should be addressed.


  Abstract

AmiGO is a web application that allows users to query, browse and visualize ontologies and related gene product annotation (association) data. AmiGO can be used online at the Gene Ontology (GO) website to access the data provided by the GO Consortium1; it can also be downloaded and installed to browse local ontologies and annotations.2 AmiGO is free open source software developed and maintained by the GO Consortium.

Availability: http://amigo.geneontology.org

Download: http://sourceforge.net/projects/geneontology/

Contact: sjcarbon{at}berkeleybop.org

Associate Editor: Martin Bishop

{dagger}The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

{ddagger}Gene Ontology Consortium, go-help{at}geneontology.org.

Received on October 2, 2008; revised on November 20, 2008; accepted on November 21, 2008

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