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Bioinformatics Advance Access originally published online on August 4, 2009
Bioinformatics 2009 25(20):2730-2731; doi:10.1093/bioinformatics/btp472
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

John W. Nicol 1, Gregg A. Helt 2, Steven G. Blanchard, Jr. 1, Archana Raja 1 and Ann E. Loraine 1,*

1 Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, North Carolina Research Campus, 600 Laureate Way, Kannapolis, NC 28081 and 2 Genomancer Consulting, Healdsburg, CA 95448, USA

* To whom correspondence should be addressed.


  Abstract

Summary: Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, desktop graphical display tool implemented in Java that supports real-time zooming and panning through a genome; layout of genomic features and datasets in moveable, adjustable tiers; incremental or genome-scale data loading from remote web servers or local files; and dynamic manipulation of quantitative data via genome graphs.

Availability: The application and source code are available from http://igb.bioviz.org and http://genoviz.sourceforge.net.

Contact: aloraine{at}uncc.edu

Associate Editor: Alex Bateman

Received on June 5, 2009; revised on July 21, 2009; accepted on July 30, 2009

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