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Bioinformatics Advance Access originally published online on July 23, 2009
Bioinformatics 2009 25(21):2848-2849; doi:10.1093/bioinformatics/btp457
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© The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

iBioSim: a tool for the analysis and design of genetic circuits

Chris J. Myers 1,*, Nathan Barker 2, Kevin Jones 1, Hiroyuki Kuwahara 3, Curtis Madsen 4 and Nam-Phuong D. Nguyen 4

1 Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, 2 Department of Computer Science and Information Systems, Southern Utah University, Cedar City, UT, USA, 3 Microsoft Research, University of Trento Centre for Computational and Systems Biology, Trento, Italy and 4 School of Computing, University of Utah, Salt Lake City, UT, USA

* To whom correspondence should be addressed.


  Abstract

Summary: iBioSim is a tool that supports learning of genetic circuit models, efficient abstraction-based analysis of these models and the design of synthetic genetic circuits. iBioSim includes project management features and a graphical user interface that facilitate the development and maintenance of genetic circuit models as well as both experimental and simulation data records.

Availability: iBioSim is available for download for Windows, Linux, and MacOS at http://www.async.ece.utah.edu/iBioSim/

Contact: myers{at}ece.utah.edu

Associate Editor: Jonathan Wren

Received on April 17, 2009; revised on June 15, 2009; accepted on July 20, 2009

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