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Bioinformatics Advance Access originally published online on August 27, 2009
Bioinformatics 2009 25(21):2853-2854; doi:10.1093/bioinformatics/btp513
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© The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

ERNEST: a toolbox for chemical reaction network theory

Nicola Soranzo and Claudio Altafini *

SISSA, via Beirut 2-4, 34151 Trieste, Italy

* To whom correspondence should be addressed.


  Abstract

Summary: ERNEST Reaction Network Equilibria Study Toolbox is a MATLAB package which, by checking various different criteria on the structure of a chemical reaction network, can exclude the multistationarity of the corresponding reaction system. The results obtained are independent of the rate constants of the reactions, and can be used for model discrimination.

Availability and Implementation: The software, implemented in MATLAB, is available under the GNU GPL free software license from http://people.sissa.it/~altafini/papers/SoAl09/. It requires the MATLAB Optimization Toolbox.

Contact: altafini{at}sissa.it

Associate Editor: Trey Ideker

Received on July 10, 2009; revised on July 10, 2009; accepted on August 12, 2009

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