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Bioinformatics Advance Access originally published online on September 4, 2009
Bioinformatics 2009 25(22):3026-3027; doi:10.1093/bioinformatics/btp523
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Saint: a lightweight integration environment for model annotation

Allyson L. Lister 1,2,*, Matthew Pocock 2, Morgan Taschuk 1,2 and Anil Wipat 1,2,*

1Centre for Integrated Systems Biology of Ageing and Nutrition, Newcastle University and 2School of Computing Science, Newcastle University, Newcastle Upon Tyne, UK

*To whom correspondence should be addressed.


  Abstract

Summary: Saint is a web application which provides a lightweight annotation integration environment for quantitative biological models. The system enables modellers to rapidly mark up models with biological information derived from a range of data sources.

Availability and Implementation: Saint is freely available for use on the web at http://www.cisban.ac.uk/saint. The web application is implemented in Google Web Toolkit and Tomcat, with all major browsers supported. The Java source code is freely available for download at http://saint-annotate.sourceforge.net. The Saint web server requires an installation of libSBML and has been tested on Linux (32-bit Ubuntu 8.10 and 9.04).

Contact: helpdesk{at}cisban.ac.uk; a.l.lister{at}ncl.ac.uk

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Alex Bateman

Received on June 8, 2009; revised on August 4, 2009; accepted on August 26, 2009

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