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Bioinformatics Advance Access originally published online on September 2, 2009
Bioinformatics 2009 25(22):3028-3030; doi:10.1093/bioinformatics/btp524
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© The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

CellClassifier: supervised learning of cellular phenotypes

Pauli Rämö , Raphael Sacher , Berend Snijder , Boris Begemann and Lucas Pelkmans *

Institute of Molecular Systems Biology, ETH Zürich, HPT E71, Wolfgang Pauli-Str. 16, 8093 Zürich, Switzerland

*To whom correspondence should be addressed.


  Abstract

Summary:CellClassifier is a tool for classifying single-cell phenotypes in microscope images. It includes several unique and user-friendly features for classification using multiclass support vector machines

Availability: Source code, user manual and SaveObjectSegmentation CellProfiler module available for download at www.cellclassifier.ethz.ch under the GPL license (implemented in Matlab).

Contact: pelkmans{at}imsb.biol.ethz.ch

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Olga Troyanskaya

Received on May 13, 2009; revised on August 3, 2009; accepted on August 28, 2009

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