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Bioinformatics Advance Access originally published online on September 10, 2009
Bioinformatics 2009 25(22):3045-3046; doi:10.1093/bioinformatics/btp536
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

QuickGO: a web-based tool for Gene Ontology searching

David Binns *, Emily Dimmer , Rachael Huntley , Daniel Barrell , Claire O'Donovan and Rolf Apweiler

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

*To whom correspondence should be addressed.


  Abstract

Summary: QuickGO is a web-based tool that allows easy browsing of the Gene Ontology (GO) and all associated electronic and manual GO annotations provided by the GO Consortium annotation groups QuickGO has been a popular GO browser for many years, but after a recent redevelopment it is now able to offer a greater range of facilities including bulk downloads of GO annotation data which can be extensively filtered by a range of different parameters and GO slim set generation.

Availability and Implementation: QuickGO has implemented in JavaScript, Ajax and HTML, with all major browsers supported. It can be queried online at http://www.ebi.ac.uk/QuickGO. The software for QuickGO is freely available under the Apache 2 licence and can be downloaded from http://www.ebi.ac.uk/QuickGO/installation.html

Contact: goa{at}ebi.ac.uk; dbinns{at}ebi.ac.uk

Associate Editor: Dmitrij Frishman

Received on July 13, 2009; revised on September 4, 2009; accepted on September 7, 2009

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