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Bioinformatics Advance Access originally published online on January 15, 2009
Bioinformatics 2009 25(5):687-689; doi:10.1093/bioinformatics/btp029
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

PROMOT: modular modeling for systems biology

Sebastian Mirschel 1,*, Katrin Steinmetz 1, Michael Rempel 1, Martin Ginkel 2 and Ernst Dieter Gilles 1

1Systems Biology Group, Max Planck Institute for Dynamics of Complex Technical Systems, 39106 Magdeburg, Germany and 2Genedata AG, 4016 Basel, Switzerland

*To whom correspondence should be addressed.


  Abstract

Summary: The modeling tool PROMOT facilitates the efficient and comprehensible setup and editing of modular models coupled with customizable visual representations. Since its last major publication in 2003, PROMOT has gained new functionality in particular support of logical models, efficient editing, visual exploration, model validation and support for SBML.

Availability: PROMOT is an open source project and freely available at http://www.mpi-magdeburg.mpg.de/projects/promot/.

Contact: mirschel{at}mpi-magdeburg.mpg.de; mirschel{at}mpi-magdeburg.mpg.de

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Alfonso Valencia

Received on October 2, 2008; revised on December 18, 2008; accepted on January 12, 2009

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