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Bioinformatics Advance Access originally published online on January 15, 2009
Bioinformatics 2009 25(5):690-691; doi:10.1093/bioinformatics/btp025
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions

Emilie Chautard 1, Lionel Ballut 1, Nicolas Thierry-Mieg 2,* and Sylvie Ricard-Blum 1,*

1UMR 5086 CNRS - Université Lyon 1, 7 passage du Vercors, 69367 Lyon Cedex 07 and 2TIMC-IMAG, UMR 5525 CNRS - Université Grenoble 1, Faculté de Médecine, 38706 La Tronche Cedex, France

*To whom correspondence should be addressed.


  Abstract

Summary: MatrixDB (http://matrixdb.ibcp.fr) is a database reporting mammalian protein–protein and protein–carbohydrate interactions involving extracellular molecules. It takes into account the full interaction repertoire of the extracellular matrix involving full-length molecules, fragments and multimers. The current version of MatrixDB contains 1972 interactions corresponding to 4412 experiments and involving 259 extracellular biomolecules.

Availability: MatrixDB is freely available at http://matrixdb.ibcp.fr

Contact: nicolas.thierry-mieg{at}imag.fr; s.ricard-blum{at}ibcp.fr

Supplementary information: Supplementary data are available at Bioinformatics online.

Associate Editor: Burkhard Rost

Received on October 23, 2008; accepted on January 8, 2009

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