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Bioinformatics Advance Access originally published online on February 2, 2009
Bioinformatics 2009 25(6):834-835; doi:10.1093/bioinformatics/btp061
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© The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling

Armando Reyes-Palomares 1,{dagger}, Raul Montañez 1,{dagger}, Alejando Real-Chicharro 1, Othmane Chniber 2, Amine Kerzazi 2, Ismael Navas-Delgado 2, Miguel Ángel Medina 1, José F. Aldana-Montes 2 and Francisca Sánchez-Jiménez 1,*

1Department of Molecular Biology and Biochemistry and unit 741 of CIBER ‘de Enfermedades Raras’ and 2Department of Computer Languages and Computational Sciences, Campus de Teatinos, Universityof Malaga, 29071, Spain

*To whom correspondence should be addressed.


  Abstract

Summary: We present Systems Biology Metabolic Modeling Assistant (SBMM Assistant), a tool built using an ontology-based mediator, and designed to facilitate metabolic modeling through the integration of data from repositories that contain valuable metabolic information. This software can be used for the visualization, design and management of metabolic networks; selection, integration and storage of metabolic information; and as an assistant for kinetic modeling.

Availability: SBMM Assistant for academic use is freely available at http://www.sbmm.uma.es.

Contact: kika{at}uma.es

{dagger}The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

Associate Editor: Trey Ideker

Received on December 27, 2008; revised on December 27, 2008; accepted on January 24, 2009

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