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Bioinformatics Advance Access originally published online on March 2, 2009
Bioinformatics 2009 25(7):962-963; doi:10.1093/bioinformatics/btp097
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

DIYA: a bacterial annotation pipeline for any genomics lab

Andrew C. Stewart 1, Brian Osborne 2 and Timothy D. Read 1,*,{dagger}

1Genomics Department, Biological Defense Research Directorate, Naval Medical Research Center, Rockville, MD and 2The BioTeam Inc., Middleton, MA, USA

*To whom correspondence should be addressed.


  Abstract

Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output.

Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/).

Contact: tread{at}emory.edu

Supplementary information: Supplementary data are available at Bioinformatics online.

{dagger}Present address: Division of Infectious Diseases and Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.

Associate Editor: John Quackenbush

Received on August 26, 2008; revised on February 12, 2009; accepted on February 16, 2009

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