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© 1988 IRL Press Ltd

AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA

Robert K. -Z. Tan , M. Prabhakaran , Chang-Shung Tung 1 and Stephen C. Harvey *

Department of Biochemistry, University of Alabama Birmingham, AL 35294
1Theoretical Biology and Biophysics Group, T-10 MS-K710, Los Alamos National Laboratory Los Alamos, NM 87545, USA

*To whom reprint requests should be sent

A UGUR is a program to predict, display and analyze the three-dimensional structure of B-DNA. The user can choose one of six models to predict the helical parameters of a given sequence. These parameters are then used to generate the coordinates of the DNA model in three-dimensional space (trajectory). The trajectory can be displayed and rotated on a graphics terminal The trajectory and helical parameters can also be searched for bends and structural homologues.

Received on August 17, 1987; accepted on December 31, 1987

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