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© Oxford University Press

SIGNAL SCAN 3.O. new database and program features

Dan S. Prestridge and Gary Stormo 1

Molecular Biology Computing Center, Department of Biochemistry, University of Minnesota 247 Gormer Laboratories, St. Paul, MN 55108
1Department of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, CO 80309–0347, USA

SIGNAL SCAN is a program that utilizes a tran.scription factor database to find potential transcription factor binding sites in DNA sequences. The program is now in its third version. The SIGNAL SCAN transcription factor database format has changed and the program output format has been improved. New features allow the user to update the SIGNAL SCAN database automatically, to retrieve original journal citations and to develop user signal databases. The program now uses an indexing algorithm, improving scanning speed by a factor of 3. SIGNAL SCAN is now net compatible and is awzilable for IBM–compatible PC, Unix and VMS platforms


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