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© Oxford University Press

Interactive and graphic coupling between multiple alignments, secondary structure predictions and motif/pattern scanning into proteins

C. Geourjon and G. Deléage 1

Institut de Biologic et de Chimie des Protéines, UPR 412–CNRS, Laboratoire de Biochimie Srructurak c Fonctionnelle, Université Claude Bernard Lyon 1 7 passage du Vercors, F–69 367 Lyon céder 07, France

1whom correspondence should be addressed

A computer module that includes multiple alignments, secondary structure prediction, and site and pattern search has been developed and integrated into our ANTHEPROT software for protein sequence analysis. All the programs can be invokeed from within any routine, thus yielding multiple path to obtain final results. All the results are graphically displayed. The main feature of this module is that all methods are connected in an interactive graphic maimer. This module has been designed to display easily the potential sites with conserved predicted structures.

Received on July 1, 1992; accepted on August 8, 1992

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