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Bioinformatics Advance Access originally published online on October 1, 2009
Bioinformatics 2009 25(23):3189-3190; doi:10.1093/bioinformatics/btp572
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Processing and population genetic analysis of multigenic datasets with ProSeq3 software

Dmitry A. Filatov

Department of Plant Sciences, University of Oxford, South Parks Rd, Oxford OX1 3RB, UK


  Abstract

Motivation: The current tendency in molecular population genetics is to use increasing numbers of genes in the analysis. Here I describe a program for handling and population genetic analysis of DNA polymorphism data collected from multiple genes. The program includes a sequence/alignment editor and an internal relational database that simplify the preparation and manipulation of multigenic DNA polymorphism datasets. The most commonly used DNA polymorphism analyses are implemented in ProSeq3, facilitating population genetic analysis of large multigenic datasets. Extensive input/output options make ProSeq3 a convenient hub for sequence data processing and analysis.

Availability: The program is available free of charge from http://dps.plants.ox.ac.uk/sequencing/proseq.htm

Contact: dmitry.filatov{at}plants.ox.ac.uk

Associate Editor: Jeffrey Barrett

Received on August 24, 2009; revised on September 27, 2009; accepted on September 29, 2009

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