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Bioinformatics Advance Access published online on October 16, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp595
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

NAViGaTOR: Network Analysis, Visualization & Graphing Toronto

Kevin R. Brown 1, David Otasek 1, Muhammad Ali 1, Michael McGuffin 2, Wing Xie 1, Baiju Devani 1, Ian Lawson van Toch 1 and Igor Jurisica 1,3,*

1Division of Signaling Biology, Ontario Cancer Institute and the University Health Network, Toronto, ON, 2Department of Software and IT Engineering, École de technologie supérieure, Montreal, QC, 3Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON

*To whom correspondence should be addressed. Igor Jurisica, E-mail: juris{at}ai.utoronto.ca


  Abstract

Summary: NAViGaTOR is a powerful graphing application for the 2D and 3D visualization of biological networks. NAViGaTOR includes a rich suite of visual mark-up tools for manual and automated annotation, fast and scalable layout algorithms, and OpenGL hardware acceleration to facilitate the visualization of large graphs. Publication-quality images can be rendered through SVG graphics export. NAViGaTOR supports community-developed data formats (PSI-XML, BioPax, and GML), is platform-independent, and is extensible through a plug-in architecture.

Availability: NAViGaTOR is freely available to the research community from http://ophid.utoronto.ca/navigator/. Installers and documentation are provided for 32- and 64-bit Windows, Mac, Linux, and Unix.

Contact: juris{at}ai.utoronto.ca

Associate Editor: Dr. Jonathan Wren

Received on July 22, 2009; revised on September 21, 2009; accepted on October 11, 2009

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