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Bioinformatics Advance Access published online on October 24, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp611
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

NGSView: an extensible open source editor for next-generation sequencing data

Erik Arner *, Yoshihide Hayashizaki and Carsten O. Daub

RIKEN Omics Science Center, RIKEN Yokohama Institute 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan

*To whom correspondence should be addressed. Dr. Erik Arner, E-mail: erik.arner{at}gmail.com


  Abstract

Summary: High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView, a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface. NGSView is available under an open source license and can be extended through a well documented API.

Availability: http://ngsview.sourceforge.net

Contact: arner{at}gsc.riken.jp

Associate Editor: Prof. Limsoon Wong

Received on July 17, 2009; revised on October 6, 2009; accepted on October 20, 2009

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