Bioinformatics Advance Access originally published online on June 7, 2005
Bioinformatics 2005 21(14):3065; doi:10.1093/bioinformatics/bti479
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Answer to the comments of K. Dobbin, J. Shih and R. Simon on the paper Evaluation of the gene-specific dye-bias in cDNA microarray experiments
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We would like to thank K. Dobbin, J. Shih and R. Simon for their comments about Martin-Magniette et al. (2005). Their remarks relate to the design of microarray experiments and notably about the use of dye-swaps. We, however, want to make it clear that our manuscript primarily focuses on the detection, quantification