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Bioinformatics Vol. 16 no. 11 2000
Pages 1048-1049
© 2000 Oxford University Press

Applications Note

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

Paul Kersey 1,, Henning Hermjakob 1 and Rolf Apweiler 1

1 EMBL Outstation Hinxton, The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK

Received on April 5, 2000 ; revised on July 11, 2000 ; accepted on August 1, 2000

Summary: The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches.

Availability: The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files.

Contact: pkersey{at}ebi.ac.uk

To whom correspondence should be addressed.


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