Bioinformatics Vol. 16 no. 2 2000
Pages 182-183
© 2000 Oxford University Press
GOLD—Graphical Overview of Linkage Disequilibrium
1 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK
To whom correspondence should be addressed.
Summary: We describe a software package that provides a graphical summary of linkage disequilibrium in human genetic data. It allows for the analysis of family data and is well suited to the analysis of dense genetic maps.
Availability: http://www.well.ox.ac.uk/asthma/GOLD
Contact: goncalo{at}well.ox.ac.uk
Received on July 26, 1999
; revised on September 17, 1999
; accepted on September 17, 1999
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N. J. Spencer-Jones, X. Wang, H. Snieder, T. D. Spector, N. D. Carter, and S. D. O'Dell Protein Tyrosine Phosphatase-1B Gene PTPN1: Selection of Tagging Single Nucleotide Polymorphisms and Association With Body Fat, Insulin Sensitivity, and the Metabolic Syndrome in a Normal Female Population Diabetes, November 1, 2005; 54(11): 3296 - 3304. [Abstract] [Full Text] [PDF]
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 M. L. Drumm, M. W. Konstan, M. D. Schluchter, A. Handler, R. Pace, F. Zou, M. Zariwala, D. Fargo, A. Xu, J. M. Dunn, et al. Genetic Modifiers of Lung Disease in Cystic Fibrosis N. Engl. J. Med., October 6, 2005; 353(14): 1443 - 1453. [Abstract] [Full Text] [PDF]
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F. Gibson, S. Hercberg, and P. Froguel Common Polymorphisms in the USF1 Gene Are Not Associated With Type 2 Diabetes in French Caucasians Diabetes, October 1, 2005; 54(10): 3040 - 3042. [Abstract] [Full Text] [PDF]
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C. G. Bell, D. Meyre, C. Samson, C. Boyle, C. Lecoeur, M. Tauber, B. Jouret, D. Jaquet, C. Levy-Marchal, M. A. Charles, et al. Association of Melanin-Concentrating Hormone Receptor 1 5' Polymorphism With Early-Onset Extreme Obesity Diabetes, October 1, 2005; 54(10): 3049 - 3055. [Abstract] [Full Text] [PDF]
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E R Martin, P G Bronson, Y-J Li, N Wall, R-H Chung, D E Schmechel, G Small, P-T Xu, J Bartlett, N Schnetz-Boutaud, et al. Interaction between the {alpha}-T catenin gene (VR22) and APOE in Alzheimer's disease J. Med. Genet., October 1, 2005; 42(10): 787 - 792. [Abstract] [Full Text] [PDF]
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S. T. Turner, G. L. Schwartz, A. B. Chapman, and E. Boerwinkle WNK1 Kinase Polymorphism and Blood Pressure Response to a Thiazide Diuretic Hypertension, October 1, 2005; 46(4): 758 - 765. [Abstract] [Full Text] [PDF]
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X. Luo, H. R. Kranzler, L. Zuo, S. Wang, H. P. Blumberg, and J. Gelernter CHRM2 gene predisposes to alcohol dependence, drug dependence and affective disorders: results from an extended case-control structured association study Hum. Mol. Genet., August 15, 2005; 14(16): 2421 - 2434. [Abstract] [Full Text] [PDF]
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A. Siddiq, F. Lepretre, S. Hercberg, P. Froguel, and F. Gibson A Synonymous Coding Polymorphism in the {alpha}2-Heremans-Schmid Glycoprotein Gene Is Associated With Type 2 Diabetes in French Caucasians Diabetes, August 1, 2005; 54(8): 2477 - 2481. [Abstract] [Full Text] [PDF]
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M. N. Weedon, K. R. Owen, B. Shields, G. Hitman, M. Walker, M. I. McCarthy, A. T. Hattersley, and T. M. Frayling A Large-Scale Association Analysis of Common Variation of the HNF1{alpha} Gene With Type 2 Diabetes in the U.K. Caucasian Population Diabetes, August 1, 2005; 54(8): 2487 - 2491. [Abstract] [Full Text] [PDF]
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E. Noguchi, Y. Yokouchi, J. Zhang, K. Shibuya, A. Shibuya, M. Bannai, K. Tokunaga, H. Doi, M. Tamari, M. Shimizu, et al. Positional Identification of an Asthma Susceptibility Gene on Human Chromosome 5q33 Am. J. Respir. Crit. Care Med., July 15, 2005; 172(2): 183 - 188. [Abstract] [Full Text] [PDF]
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 L. S. Rozek, S. M. Lipkin, E. R. Fearon, S. Hanash, T. J. Giordano, J. K. Greenson, R. Kuick, D. E. Misek, J. M.G. Taylor, J. A. Douglas, et al. CDX2 Polymorphisms, RNA Expression, and Risk of Colorectal Cancer Cancer Res., July 1, 2005; 65(13): 5488 - 5492. [Abstract] [Full Text] [PDF]
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S. J. Newhouse, C. Wallace, R. Dobson, C. Mein, J. Pembroke, M. Farrall, D. Clayton, M. Brown, N. Samani, A. Dominiczak, et al. Haplotypes of the WNK1 gene associate with blood pressure variation in a severely hypertensive population from the British Genetics of Hypertension study Hum. Mol. Genet., July 1, 2005; 14(13): 1805 - 1814. [Abstract] [Full Text] [PDF]
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S. M. J. Harney, C. Meisel, A.-M. Sims, P. Y. Woon, B. P. Wordsworth, and M. A. Brown Genetic and genomic studies of PADI4 in rheumatoid arthritis Rheumatology, July 1, 2005; 44(7): 869 - 872. [Abstract] [Full Text] [PDF]
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J. H. Callicott, R. E. Straub, L. Pezawas, M. F. Egan, V. S. Mattay, A. R. Hariri, B. A. Verchinski, A. Meyer-Lindenberg, R. Balkissoon, B. Kolachana, et al. Variation in DISC1 affects hippocampal structure and function and increases risk for schizophrenia PNAS, June 14, 2005; 102(24): 8627 - 8632. [Abstract] [Full Text] [PDF]
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D. P.B. McGovern, P. Hysi, T. Ahmad, D. A. van Heel, M. F. Moffatt, A. Carey, W. O.C. Cookson, and D. P. Jewell Association between a complex insertion/deletion polymorphism in NOD1 (CARD4) and susceptibility to inflammatory bowel disease Hum. Mol. Genet., May 15, 2005; 14(10): 1245 - 1250. [Abstract] [Full Text] [PDF]
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Z. Lin, D. Walther, X.-Y. Yu, S. Li, T. Drgon, and G. R. Uhl SLC18A2 promoter haplotypes and identification of a novel protective factor against alcoholism Hum. Mol. Genet., May 15, 2005; 14(10): 1393 - 1404. [Abstract] [Full Text] [PDF]
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M. S. Orloff, S. K. Iyengar, C. A. Winkler, K. A. B. Goddard, R. A. Dart, T. S. Ahuja, M. Mokrzycki, W. A. Briggs, S. M. Korbet, P. L. Kimmel, et al. Variants in the Wilms' tumor gene are associated with focal segmental glomerulosclerosis in the African American population Physiol Genomics, April 14, 2005; 21(2): 212 - 221. [Abstract] [Full Text] [PDF]
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P. Hysi, M. Kabesch, M. F. Moffatt, M. Schedel, D. Carr, Y. Zhang, B. Boardman, E. von Mutius, S. K. Weiland, W. Leupold, et al. NOD1 variation, immunoglobulin E and asthma Hum. Mol. Genet., April 1, 2005; 14(7): 935 - 941. [Abstract] [Full Text] [PDF]
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A. M. Bagwell, J. L. Bento, J. C. Mychaleckyj, B. I. Freedman, C. D. Langefeld, and D. W. Bowden Genetic Analysis of HNF4A Polymorphisms in Caucasian-American Type 2 Diabetes Diabetes, April 1, 2005; 54(4): 1185 - 1190. [Abstract] [Full Text] [PDF]
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N. Ertekin-Taner, J. Ronald, L. Feuk, J. Prince, M. Tucker, L. Younkin, M. Hella, S. Jain, A. Hackett, L. Scanlin, et al. Elevated amyloid {beta} protein (A{beta}42) and late onset Alzheimer's disease are associated with single nucleotide polymorphisms in the urokinase-type plasminogen activator gene Hum. Mol. Genet., February 1, 2005; 14(3): 447 - 460. [Abstract] [Full Text] [PDF]
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O. M. Sinilnikova, S. M. Ginolhac, C. Magnard, M. Leone, O. Anczukow, D. Hughes, K. Moreau, D. Thompson, C. Coutanson, J. Hall, et al. Acetyl-CoA carboxylase {alpha} gene and breast cancer susceptibility Carcinogenesis, December 1, 2004; 25(12): 2417 - 2424. [Abstract] [Full Text] [PDF]
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F. Gibson and P. Froguel Genetics of the APM1 Locus and Its Contribution to Type 2 Diabetes Susceptibility in French Caucasians Diabetes, November 1, 2004; 53(11): 2977 - 2983. [Abstract] [Full Text] [PDF]
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M. N. Weedon, K. R. Owen, B. Shields, G. Hitman, M. Walker, M. I. McCarthy, L. D. Love-Gregory, M. A. Permutt, A. T. Hattersley, and T. M. Frayling Common Variants of the Hepatocyte Nuclear Factor-4{alpha} P2 Promoter Are Associated With Type 2 Diabetes in the U.K. Population Diabetes, November 1, 2004; 53(11): 3002 - 3006. [Abstract] [Full Text] [PDF]
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J. L. Bento, N. D. Palmer, J. C. Mychaleckyj, L. A. Lange, C. D. Langefeld, S. S. Rich, B. I. Freedman, and D. W. Bowden Association of Protein Tyrosine Phosphatase 1B Gene Polymorphisms With Type 2 Diabetes Diabetes, November 1, 2004; 53(11): 3007 - 3012. [Abstract] [Full Text] [PDF]
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H. Schmidt, Y. S. Aulchenko, N. Schweighofer, R. Schmidt, S. Frank, G. M. Kostner, E. Ott, and C. van Duijn Angiotensinogen Promoter B-Haplotype Associated With Cerebral Small Vessel Disease Enhances Basal Transcriptional Activity Stroke, November 1, 2004; 35(11): 2592 - 2597. [Abstract] [Full Text] [PDF]
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X. Ma, S. Bacci, W. Mlynarski, L. Gottardo, T. Soccio, C. Menzaghi, E. Iori, R. A. Lager, A. R. Shroff, E. V. Gervino, et al. A common haplotype at the CD36 locus is associated with high free fatty acid levels and increased cardiovascular risk in Caucasians Hum. Mol. Genet., October 1, 2004; 13(19): 2197 - 2205. [Abstract] [Full Text] [PDF]
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M. F. Egan, R. E. Straub, T. E. Goldberg, I. Yakub, J. H. Callicott, A. R. Hariri, V. S. Mattay, A. Bertolino, T. M. Hyde, C. Shannon-Weickert, et al. Variation in GRM3 affects cognition, prefrontal glutamate, and risk for schizophrenia PNAS, August 24, 2004; 101(34): 12604 - 12609. [Abstract] [Full Text] [PDF]
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Z. Ren, Q. Cai, X.-O. Shu, H. Cai, C. Li, H. Yu, Y.-T. Gao, and W. Zheng Genetic Polymorphisms in the IGFBP3 Gene: Association with Breast Cancer Risk and Blood IGFBP-3 Protein Levels among Chinese Women Cancer Epidemiol. Biomarkers Prev., August 1, 2004; 13(8): 1290 - 1295. [Abstract] [Full Text] [PDF]
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S. Nejentsev, L. Godfrey, H. Snook, H. Rance, S. Nutland, N. M. Walker, A. C. Lam, C. Guja, C. Ionescu-Tirgoviste, D. E. Undlien, et al. Comparative high-resolution analysis of linkage disequilibrium and tag single nucleotide polymorphisms between populations in the vitamin D receptor gene Hum. Mol. Genet., August 1, 2004; 13(15): 1633 - 1639. [Abstract] [Full Text] [PDF]
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 F. J. Serajee, R. Nabi, Hailang Zhong, and A.H.M. Mahbubul Huq Polymorphisms in Xenobiotic Metabolism Genes and Autism J Child Neurol, June 1, 2004; 19(6): 413 - 417. [Abstract] [PDF]
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P. Holm, B. Rydlander, H. Luthman, and I. Kockum Interaction and Association Analysis of a Type 1 Diabetes Susceptibility Locus on Chromosome 5q11-q13 and the 7q32 Chromosomal Region in Scandinavian Families Diabetes, June 1, 2004; 53(6): 1584 - 1591. [Abstract] [Full Text] [PDF]
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M. Gaasenbeek, B. L. Powell, U. Sovio, L. Haddad, N. Gharani, A. Bennett, C. J. Groves, K. Rush, M. J. Goh, G. S. Conway, et al. Large-Scale Analysis of the Relationship between CYP11A Promoter Variation, Polycystic Ovarian Syndrome, and Serum Testosterone J. Clin. Endocrinol. Metab., May 1, 2004; 89(5): 2408 - 2413. [Abstract] [Full Text] [PDF]
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 K. Zhang, Z. S. Qin, J. S. Liu, T. Chen, M. S. Waterman, and F. Sun Haplotype Block Partitioning and Tag SNP Selection Using Genotype Data and Their Applications to Association Studies Genome Res., May 1, 2004; 14(5): 908 - 916. [Abstract] [Full Text] [PDF]
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 N. M. Williams, A Preece, D. W. Morris, G. Spurlock, N. J. Bray, M. Stephens, N. Norton, H. Williams, M. Clement, S. Dwyer, et al. Identification in 2 Independent Samples of a Novel Schizophrenia Risk Haplotype of the Dystrobrevin Binding Protein Gene (DTNBP1) Arch Gen Psychiatry, April 1, 2004; 61(4): 336 - 344. [Abstract] [Full Text] [PDF]
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A Rauch, K Devriendt, A Koch, R Rauch, M Gewillig, C Kraus, M Weyand, H Singer, A Reis, and M Hofbeck Assessment of association between variants and haplotypes of the remaining TBX1 gene and manifestations of congenital heart defects in 22q11.2 deletion patients J. Med. Genet., April 1, 2004; 41(4): e40 - e40. [Full Text] [PDF]
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