Bioinformatics Vol. 16 no. 4 2000
Pages 404-405
© 2000 Oxford University Press
The PSIPRED protein structure prediction server
1 Protein Bioinformatics Group, Department
of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK
2 Department of Biological Sciences, Brunel
University, Uxbridge, UB8 3PH, UK
Received on November 8, 1999
; accepted on December 14, 1999
Summary: The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their sequence: PSIPRED, a highly accurate secondary structure prediction method; MEMSAT 2, a new version of a widely used transmembrane topology prediction method; or GenTHREADER, a sequence profile based fold recognition method.
Availability: Freely available to non-commercial users at http://globin.bio.warwick.ac.uk/psipred/
Contact: david.jones{at}brunel.ac.uk
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  J. L. Baltz, D. J. Filman, M. Ciustea, J. E. Y. Silverman, C. L. Lautenschlager, D. M. Coen, R. P. Ricciardi, and J. M. Hogle The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi's Sarcoma-Associated Herpesvirus J. Virol., December 1, 2009; 83(23): 12215 - 12228. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. S. Mahon, A. J. O'Donoghue, D. H. Goetz, P. G. Murray, C. S. Craik, and M. G. Tuohy Characterization of a multimeric, eukaryotic prolyl aminopeptidase: an inducible and highly specific intracellular peptidase from the non-pathogenic fungus Talaromyces emersonii Microbiology, November 1, 2009; 155(11): 3673 - 3682. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. A. Martin-Visscher, X. Gong, M. Duszyk, and J. C. Vederas The Three-dimensional Structure of Carnocyclin A Reveals That Many Circular Bacteriocins Share a Common Structural Motif J. Biol. Chem., October 16, 2009; 284(42): 28674 - 28681. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Saha, K. H. Biswas, C. Kondapalli, N. Isloor, and S. S. Visweswariah The Linker Region in Receptor Guanylyl Cyclases Is a Key Regulatory Module: MUTATIONAL ANALYSIS OF GUANYLYL CYCLASE C J. Biol. Chem., October 2, 2009; 284(40): 27135 - 27145. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. R. Blower, P. C. Fineran, M. J. Johnson, I. K. Toth, D. P. Humphreys, and G. P. C. Salmond Mutagenesis and Functional Characterization of the RNA and Protein Components of the toxIN Abortive Infection and Toxin-Antitoxin Locus of Erwinia J. Bacteriol., October 1, 2009; 191(19): 6029 - 6039. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. A. DeGrasse, K. N. DuBois, D. Devos, T. N. Siegel, A. Sali, M. C. Field, M. P. Rout, and B. T. Chait Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved from the Last Common Eukaryotic Ancestor Mol. Cell. Proteomics, September 1, 2009; 8(9): 2119 - 2130. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. J. Baines, P. A. Bignone, M. D.A. King, A. M. Maggs, P. M. Bennett, J. C. Pinder, and G. W. Phillips The CKK Domain (DUF1781) Binds Microtubules and Defines the CAMSAP/ssp4 Family of Animal Proteins Mol. Biol. Evol., September 1, 2009; 26(9): 2005 - 2014. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Belville, J.-D. Marechal, S. Pennetier, P. Carmillo, L. Masgrau, L. Messika-Zeitoun, J. Galey, G. Machado, D. Treton, J. Gonzales, et al. Natural mutations of the anti-Mullerian hormone type II receptor found in persistent Mullerian duct syndrome affect ligand binding, signal transduction and cellular transport Hum. Mol. Genet., August 15, 2009; 18(16): 3002 - 3013. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Moeller, Q. Gan, and K. Wang A bacterial signal peptide is functional in plants and directs proteins to the secretory pathway J. Exp. Bot., August 1, 2009; 60(12): 3337 - 3352. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. M. Phelan, C.-T. Thai, D. C. Soares, R. T. Ogata, P. N. Barlow, and J. Bramham Solution Structure of Factor I-like Modules from Complement C7 Reveals a Pair of Follistatin Domains in Compact Pseudosymmetric Arrangement J. Biol. Chem., July 17, 2009; 284(29): 19637 - 19649. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. A. Bippes, A. Zeltina, F. Casagrande, M. Ratera, M. Palacin, D. J. Muller, and D. Fotiadis Substrate Binding Tunes Conformational Flexibility and Kinetic Stability of an Amino Acid Antiporter J. Biol. Chem., July 10, 2009; 284(28): 18651 - 18663. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. S. Unal, R. Zhao, M.-H. Chang, A. Fiser, M. F. Romero, and I. D. Goldman The Functional Roles of the His247 and His281 Residues in Folate and Proton Translocation Mediated by the Human Proton-coupled Folate Transporter SLC46A1 J. Biol. Chem., June 26, 2009; 284(26): 17846 - 17857. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. M. McDonald, D. Aguayo, F. D. Gonzalez-Nilo, and J. T. Patton Shared and Group-Specific Features of the Rotavirus RNA Polymerase Reveal Potential Determinants of Gene Reassortment Restriction J. Virol., June 15, 2009; 83(12): 6135 - 6148. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. R. Mott, A. A. Chentoufi, D. Carpenter, L. BenMohamed, S. L. Wechsler, and H. Ghiasi The Role of a Glycoprotein K (gK) CD8+ T-Cell Epitope of Herpes Simplex Virus on Virus Replication and Pathogenicity Invest. Ophthalmol. Vis. Sci., June 1, 2009; 50(6): 2903 - 2912. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Wang, R. I. Sadreyev, and N. V. Grishin PROCAIN: protein profile comparison with assisting information Nucleic Acids Res., June 1, 2009; 37(11): 3522 - 3530. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Bjorkholm, P. Daniluk, A. Kryshtafovych, K. Fidelis, R. Andersson, and T. R. Hvidsten Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts Bioinformatics, May 15, 2009; 25(10): 1264 - 1270. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Mogi Over-Expression and Characterization of Bacillus subtilis Heme O Synthase J. Biochem., May 1, 2009; 145(5): 669 - 675. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Walker, D. Doenecke, and J. Kahle Importin 13 Mediates Nuclear Import of Histone Fold-containing Chromatin Accessibility Complex Heterodimers J. Biol. Chem., April 24, 2009; 284(17): 11652 - 11662. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Kahle, E. Piaia, S. Neimanis, M. Meisterernst, and D. Doenecke Regulation of Nuclear Import and Export of Negative Cofactor 2 J. Biol. Chem., April 3, 2009; 284(14): 9382 - 9393. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Rihakova, V. W. Petit, K. Demnerova, H. Prevost, S. Rebuffat, and D. Drider Insights into Structure-Activity Relationships in the C-Terminal Region of Divercin V41, a Class IIa Bacteriocin with High-Level Antilisterial Activity Appl. Envir. Microbiol., April 1, 2009; 75(7): 1811 - 1819. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Dutta, K. Bandyopadhyay, A. B. Datta, A. A. Sardesai, and P. Parrack Properties of HflX, an Enigmatic Protein from Escherichia coli J. Bacteriol., April 1, 2009; 191(7): 2307 - 2314. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Legardinier, B. Legrand, C. Raguenes-Nicol, A. Bondon, S. Hardy, C. Tascon, E. Le Rumeur, and J.-F. Hubert A Two-amino Acid Mutation Encountered in Duchenne Muscular Dystrophy Decreases Stability of the Rod Domain 23 (R23) Spectrin-like Repeat of Dystrophin J. Biol. Chem., March 27, 2009; 284(13): 8822 - 8832. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. J. Jervis, J. C. Crack, G. White, P. J. Artymiuk, M. R. Cheesman, A. J. Thomson, N. E. Le Brun, and J. Green The O2 sensitivity of the transcription factor FNR is controlled by Ser24 modulating the kinetics of [4Fe-4S] to [2Fe-2S] conversion PNAS, March 24, 2009; 106(12): 4659 - 4664. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Cormier, M.-J. Clement, M. Knossow, S. Lachkar, P. Savarin, F. Toma, A. Sobel, B. Gigant, and P. A. Curmi The PN2-3 Domain of Centrosomal P4.1-associated Protein Implements a Novel Mechanism for Tubulin Sequestration J. Biol. Chem., March 13, 2009; 284(11): 6909 - 6917. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Varsaki, G. Moncalian, M. del Pilar Garcillan-Barcia, C. Drainas, and F. de la Cruz Analysis of ColE1 MbeC Unveils an Extended Ribbon-Helix-Helix Family of Nicking Accessory Proteins J. Bacteriol., March 1, 2009; 191(5): 1446 - 1455. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Brombacher, S. Urwyler, C. Ragaz, S. S. Weber, K. Kami, M. Overduin, and H. Hilbi Rab1 Guanine Nucleotide Exchange Factor SidM Is a Major Phosphatidylinositol 4-Phosphate-binding Effector Protein of Legionella pneumophila J. Biol. Chem., February 20, 2009; 284(8): 4846 - 4856. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Z. Yagil, G. Kay, H. Nechushtan, and E. Razin A Specific Epitope of Protein Inhibitor of Activated STAT3 Is Responsible for the Induction of Apoptosis in Rat Transformed Mast Cells J. Immunol., February 15, 2009; 182(4): 2168 - 2175. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. M. R. Danielsen, D. H. Larsen, K. B. Schou, R. Freire, J. Falck, J. Bartek, and J. Lukas HCLK2 Is Required for Activity of the DNA Damage Response Kinase ATR J. Biol. Chem., February 13, 2009; 284(7): 4140 - 4147. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Dherin, E. Gueneau, M. Francin, M. Nunez, S. Miron, S. E. Liberti, L. J. Rasmussen, S. Zinn-Justin, B. Gilquin, J.-B. Charbonnier, et al. Characterization of a Highly Conserved Binding Site of Mlh1 Required for Exonuclease I-Dependent Mismatch Repair Mol. Cell. Biol., February 1, 2009; 29(3): 907 - 918. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 O. O. Panasenko, F. P. A. David, and M. A. Collart Ribosome Association and Stability of the Nascent Polypeptide-Associated Complex Is Dependent Upon Its Own Ubiquitination Genetics, February 1, 2009; 181(2): 447 - 460. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Pugalenthi, K. Tang, P. N. Suganthan, and S. Chakrabarti Identification of structurally conserved residues of proteins in absence of structural homologs using neural network ensemble Bioinformatics, January 15, 2009; 25(2): 204 - 210. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. P. Losick, K. Stephan, I. I. Smirnova, R. R. Isberg, and A. Poltorak A Hemidominant Naip5 Allele in Mouse Strain MOLF/Ei-Derived Macrophages Restricts Legionella pneumophila Intracellular Growth Infect. Immun., January 1, 2009; 77(1): 196 - 204. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Mulvenna, B. Hamilton, S. H. Nagaraj, D. Smyth, A. Loukas, and J. J. Gorman Proteomics Analysis of the Excretory/Secretory Component of the Blood-feeding Stage of the Hookworm, Ancylostoma caninum Mol. Cell. Proteomics, January 1, 2009; 8(1): 109 - 121. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Martin, S. Abubucker, T. Wylie, Y. Yin, Z. Wang, and M. Mitreva Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics Nucleic Acids Res., January 1, 2009; 37(suppl_1): D571 - D578. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Schaeffer, S. Santambrogio, S. Perucca, G. Casari, and L. Rampoldi Analysis of Uromodulin Polymerization Provides New Insights into the Mechanisms Regulating ZP Domain-mediated Protein Assembly Mol. Biol. Cell, January 1, 2009; 20(2): 589 - 599. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. V. Elias, R. Quiroga, N. Gottig, H. Nakanishi, T. E. Nash, A. Neiman, and H. D. Lujan Characterization of SNAREs Determines the Absence of a Typical Golgi Apparatus in the Ancient Eukaryote Giardia lamblia J. Biol. Chem., December 19, 2008; 283(51): 35996 - 36010. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Song, K. Leehy, R. T. Warrington, J. C. Lamb, Y. V. Surovtseva, and D. E. Shippen STN1 protects chromosome ends in Arabidopsis thaliana PNAS, December 16, 2008; 105(50): 19815 - 19820. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Shemesh, A. Toporik, Z. Levine, I. Hecht, G. Rotman, A. Wool, D. Dahary, E. Gofer, Y. Kliger, M. A. Soffer, et al. Discovery and Validation of Novel Peptide Agonists for G-protein-coupled Receptors J. Biol. Chem., December 12, 2008; 283(50): 34643 - 34649. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Yerushalmi, C. Nadler, T. Berdichevski, and I. Rosenshine Mutational Analysis of the Locus of Enterocyte Effacement-Encoded Regulator (Ler) of Enteropathogenic Escherichia coli J. Bacteriol., December 1, 2008; 190(23): 7808 - 7818. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. E. Hart, C. J. Howe, K. Mizuguchi, and J. Fernandez-Recio Docking of cytochrome c6 and plastocyanin to the aa3-type cytochrome c oxidase in the cyanobacterium Phormidium laminosum Protein Eng. Des. Sel., December 1, 2008; 21(12): 689 - 698. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. D. Schlieker, A. G. Van der Veen, J. R. Damon, E. Spooner, and H. L. Ploegh A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway PNAS, November 25, 2008; 105(47): 18255 - 18260. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Demene, T. Ducat, K. De Guillen, C. Birck, S. Aymerich, M. Kochoyan, and N. Declerck Structural Mechanism of Signal Transduction between the RNA-binding Domain and the Phosphotransferase System Regulation Domain of the LicT Antiterminator J. Biol. Chem., November 7, 2008; 283(45): 30838 - 30849. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Kataoka, T. Tanaka, T. Kohno, and Y. Kajiyama The Carboxyl-Terminal Domain of TraR, a Streptomyces HutC Family Repressor, Functions in Oligomerization J. Bacteriol., November 1, 2008; 190(21): 7164 - 7169. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Matsumura, N. Ban, and N. Inagaki Aberrant catalytic cycle and impaired lipid transport into intracellular vesicles in ABCA3 mutants associated with nonfatal pediatric interstitial lung disease Am J Physiol Lung Cell Mol Physiol, October 1, 2008; 295(4): L698 - L707. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Koszelak-Rosenblum, A. C. Krol, D. M. Simmons, C. C. Goulah, L. Wroblewski, and M. G. Malkowski His-311 and Arg-559 Are Key Residues Involved in Fatty Acid Oxygenation in Pathogen-inducible Oxygenase J. Biol. Chem., September 5, 2008; 283(36): 24962 - 24971. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Just, F. Butter, M. Trenkmann, T. Heitkam, M. Morl, and H. Betat A comparative analysis of two conserved motifs in bacterial poly(A) polymerase and CCA-adding enzyme Nucleic Acids Res., September 1, 2008; 36(16): 5212 - 5220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Lagerback and K. Carlson Amino Acid Residues in the GIY-YIG Endonuclease II of Phage T4 Affecting Sequence Recognition and Binding as Well as Catalysis J. Bacteriol., August 15, 2008; 190(16): 5533 - 5544. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Schilde, K. Lutter, R. Kissmehl, and H. Plattner Molecular Identification of a SNAP-25-Like SNARE Protein in Paramecium Eukaryot. Cell, August 1, 2008; 7(8): 1387 - 1402. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. A. Daep, R. J. Lamont, and D. R. Demuth Interaction of Porphyromonas gingivalis with Oral Streptococci Requires a Motif That Resembles the Eukaryotic Nuclear Receptor Box Protein-Protein Interaction Domain Infect. Immun., July 1, 2008; 76(7): 3273 - 3280. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Shi, Y. Huang, M. Sutton-Smith, B. Tissot, M. Panico, H. R. Morris, A. Dell, S. M. Haslam, J. Boyington, B. S. Graham, et al. A Filovirus-Unique Region of Ebola Virus Nucleoprotein Confers Aberrant Migration and Mediates Its Incorporation into Virions J. Virol., July 1, 2008; 82(13): 6190 - 6199. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. M. Hales, N. J. Knowles, P. S. Reddy, L. Xu, C. Hay, and P. L. Hallenbeck Complete genome sequence analysis of Seneca Valley virus-001, a novel oncolytic picornavirus J. Gen. Virol., May 1, 2008; 89(5): 1265 - 1275. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Jablonka-Shariff, C. A. Pearl, A. Comstock, and I. Boime A Carboxyl-terminal Sequence in the Lutropin {beta} Subunit Contributes to the Sorting of Lutropin to the Regulated Pathway J. Biol. Chem., April 25, 2008; 283(17): 11485 - 11492. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Safi, K. A. Wallace, and L. N. Rusche Evolution of New Function through a Single Amino Acid Change in the Yeast Repressor Sum1p Mol. Cell. Biol., April 15, 2008; 28(8): 2567 - 2578. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. M. Anderson, D. Korkin, D. L. Smith, S. Makovets, J. J. Seidel, A. Sali, and E. H. Blackburn Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break Genes & Dev., April 1, 2008; 22(7): 854 - 859. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. E. Landers, A. L. Leclerc, L. Shi, A. Virkud, T. Cho, M. M. Maxwell, A. F. Henry, M. Polak, J. D. Glass, T. J. Kwiatkowski, et al. New VAPB deletion variant and exclusion of VAPB mutations in familial ALS Neurology, April 1, 2008; 70(14): 1179 - 1185. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Thakur, R. Chaba, A. K. Mondal, and P. K. Chakraborti Interdomain Interaction Reconstitutes the Functionality of PknA, a Eukaryotic Type Ser/Thr Kinase from Mycobacterium tuberculosis J. Biol. Chem., March 21, 2008; 283(12): 8023 - 8033. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Ansong, S. O. Purvine, J. N. Adkins, M. S. Lipton, and R. D. Smith Proteogenomics: needs and roles to be filled by proteomics in genome annotation Brief Funct Genomic Proteomic, March 10, 2008; (2008) eln010v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. D. S. Dixon, D. K. Arneman, A. S. Rachlin, N. R. Sundaresan, M. J. Costello, S. L. Campbell, and C. A. Otey Palladin Is an Actin Cross-linking Protein That Uses Immunoglobulin-like Domains to Bind Filamentous Actin J. Biol. Chem., March 7, 2008; 283(10): 6222 - 6231. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. J. Betts, L. E. Twiggs, M. S. Sal, P. B. Wyrick, and K. A. Fields Bioinformatic and Biochemical Evidence for the Identification of the Type III Secretion System Needle Protein of Chlamydia trachomatis J. Bacteriol., March 1, 2008; 190(5): 1680 - 1690. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. C. Oliver and M. Paetzel Crystal Structure of the Major Periplasmic Domain of the Bacterial Membrane Protein Assembly Facilitator YidC J. Biol. Chem., February 22, 2008; 283(8): 5208 - 5216. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W. Fei, G. Shui, B. Gaeta, X. Du, L. Kuerschner, P. Li, A. J. Brown, M. R. Wenk, R. G. Parton, and H. Yang Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast J. Cell Biol., February 6, 2008; 180(3): 473 - 482. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Wen, V. S. Golubkov, A. Y. Strongin, W. Jiang, and J. C. Reed Interaction of Hepatitis B Viral Oncoprotein with Cellular Target HBXIP Dysregulates Centrosome Dynamics and Mitotic Spindle Formation J. Biol. Chem., February 1, 2008; 283(5): 2793 - 2803. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Akhavan, S. N. Crivelli, M. Singh, V. R. Lingappa, and J. L. Muschler SEA domain proteolysis determines the functional composition of dystroglycan FASEB J, February 1, 2008; 22(2): 612 - 621. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. J. Diaz-Mejia, C. F. Amabile-Cuevas, I. Rosas, and V. Souza An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and environmental origins Microbiology, January 1, 2008; 154(1): 94 - 102. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. T. A. Shamim, M. Anwaruddin, and H.A. Nagarajaram Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs Bioinformatics, December 15, 2007; 23(24): 3320 - 3327. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Halder, A. B. Datta, and P. Parrack Probing the Antiprotease Activity of {lambda}CIII, an Inhibitor of the Escherichia coli Metalloprotease HflB (FtsH) J. Bacteriol., November 15, 2007; 189(22): 8130 - 8138. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Ganguly, T. Stoeger, S. C. Wesselkamper, C. Reinhard, M. A. Sartor, M. Medvedovic, C. R. Tomlinson, I. Bolle, J. M. Mason, G. D. Leikauf, et al. Candidate genes controlling pulmonary function in mice: transcript profiling and predicted protein structure Physiol Genomics, November 14, 2007; 31(3): 410 - 421. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. A. Tews and G. Meyers The Pestivirus Glycoprotein Erns Is Anchored in Plane in the Membrane via an Amphipathic Helix J. Biol. Chem., November 9, 2007; 282(45): 32730 - 32741. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Bettegowda, J. Yao, A. Sen, Q. Li, K.-B. Lee, Y. Kobayashi, O. V. Patel, P. M. Coussens, J. J. Ireland, and G. W. Smith JY-1, an oocyte-specific gene, regulates granulosa cell function and early embryonic development in cattle PNAS, November 6, 2007; 104(45): 17602 - 17607. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Vercammen, W. Declercq, P. Vandenabeele, and F. Van Breusegem Are metacaspases caspases? J. Cell Biol., November 5, 2007; 179(3): 375 - 380. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Obermeyer, P. Fraisl, C. C. DiRusso, and P. N. Black Topology of the yeast fatty acid transport protein Fat1p: mechanistic implications for functional domains on the cytosolic surface of the plasma membrane J. Lipid Res., November 1, 2007; 48(11): 2354 - 2364. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Zimmann, A. Steinbrugge, M. Schniederberend, K. Jung, and K. Altendorf The Extension of the Fourth Transmembrane Helix of the Sensor Kinase KdpD of Escherichia coli Is Involved in Sensing J. Bacteriol., October 15, 2007; 189(20): 7326 - 7334. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Fernandez-Fuentes, B. K. Rai, C. J. Madrid-Aliste, J. Eduardo Fajardo, and A. Fiser Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments Bioinformatics, October 1, 2007; 23(19): 2558 - 2565. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Borziak and I. B. Zhulin FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes Bioinformatics, October 1, 2007; 23(19): 2518 - 2521. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Pukatzki, A. T. Ma, A. T. Revel, D. Sturtevant, and J. J. Mekalanos Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin PNAS, September 25, 2007; 104(39): 15508 - 15513. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. P. John, T. Wang, S. Steffen, S. Longhi, C. S. Schmaljohn, and C. B. Jonsson Ebola Virus VP30 Is an RNA Binding Protein J. Virol., September 1, 2007; 81(17): 8967 - 8976. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. A. Shchedrina, S. V. Novoselov, M. Yu. Malinouski, and V. N. Gladyshev Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif PNAS, August 28, 2007; 104(35): 13919 - 13924. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda, and T. Noguchi POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions Bioinformatics, August 15, 2007; 23(16): 2046 - 2053. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Yu, Y.-W. Faan, W. Y. K. Chung, and J. S. H. Tsang Isolation and Characterization of a Novel Haloacid Permease from Burkholderia cepacia MBA4 Appl. Envir. Microbiol., August 1, 2007; 73(15): 4874 - 4880. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Julenius NetCGlyc 1.0: prediction of mammalian C-mannosylation sites Glycobiology, August 1, 2007; 17(8): 868 - 876. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Zhou, W.-P. Tzeng, W. Yang, Y. Zhou, Y. Ye, H.-w. Lee, T. K. Frey, and J. Yang Identification of a Ca2+-Binding Domain in the Rubella Virus Nonstructural Protease J. Virol., July 15, 2007; 81(14): 7517 - 7528. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Ballicora, E. D. Erben, T. Yazaki, A. L. Bertolo, A. M. Demonte, J. R. Schmidt, M. Aleanzi, C. M. Bejar, C. M. Figueroa, C. M. Fusari, et al. Identification of Regions Critically Affecting Kinetics and Allosteric Regulation of the Escherichia coli ADP-Glucose Pyrophosphorylase by Modeling and Pentapeptide-Scanning Mutagenesis J. Bacteriol., July 15, 2007; 189(14): 5325 - 5333. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-H. Wong, T.-Y. Lee, H.-K. Liang, C.-M. Huang, T.-Y. Wang, Y.-H. Yang, C.-H. Chu, H.-D. Huang, M.-T. Ko, and J.-K. Hwang KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns Nucleic Acids Res., July 13, 2007; 35(suppl_2): W588 - W594. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Fernandez-Fuentes, C. J. Madrid-Aliste, B. K. Rai, J. E. Fajardo, and A. Fiser M4T: a comparative protein structure modeling server Nucleic Acids Res., July 13, 2007; 35(suppl_2): W363 - W368. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. del Val, P. Ernst, M Falkenhahn, C. Fladerer, K. H. Glatting, S. Suhai, and A. Hotz-Wagenblatt ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ Nucleic Acids Res., July 13, 2007; 35(suppl_2): W444 - W450. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-T. Su, C.-Y. Chen, and C.-M. Hsu iPDA: integrated protein disorder analyzer Nucleic Acids Res., July 13, 2007; 35(suppl_2): W465 - W472. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Vos, N. Dekker, B. Distel, J. A. M. Leunissen, and F. Hochstenbach Role of the Synthase Domain of Ags1p in Cell Wall {alpha}-Glucan Biosynthesis in Fission Yeast J. Biol. Chem., June 29, 2007; 282(26): 18969 - 18979. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. M. Walraven, J. O. Trent, and D. W. Hein Computational and Experimental Analyses of Mammalian Arylamine N-Acetyltransferase Structure and Function Drug Metab. Dispos., June 1, 2007; 35(6): 1001 - 1007. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. J. Fenner, W. Goh, and J. Kwang Dissection of Double-Stranded RNA Binding Protein B2 from Betanodavirus J. Virol., June 1, 2007; 81(11): 5449 - 5459. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Kaluzny, P. D. Abeyrathne, and J. S. Lam Coexistence of Two Distinct Versions of O-Antigen Polymerase, Wzy-Alpha and Wzy-Beta, in Pseudomonas aeruginosa Serogroup O2 and Their Contributions to Cell Surface Diversity J. Bacteriol., June 1, 2007; 189(11): 4141 - 4152. [Abstract] [Full Text] [PDF]
|
|