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Bioinformatics Vol. 16 no. 4 2000
Pages 404-405
© 2000 Oxford University Press

The PSIPRED protein structure prediction server

Liam J. McGuffin 1,2, Kevin Bryson 1 and David T. Jones 1,2

1 Protein Bioinformatics Group, Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK
2 Department of Biological Sciences, Brunel University, Uxbridge, UB8 3PH, UK

Received on November 8, 1999 ; accepted on December 14, 1999

Summary: The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their sequence: PSIPRED, a highly accurate secondary structure prediction method; MEMSAT 2, a new version of a widely used transmembrane topology prediction method; or GenTHREADER, a sequence profile based fold recognition method.

Availability: Freely available to non-commercial users at http://globin.bio.warwick.ac.uk/psipred/

Contact: david.jones{at}brunel.ac.uk


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S. Halder, A. B. Datta, and P. Parrack
Probing the Antiprotease Activity of {lambda}CIII, an Inhibitor of the Escherichia coli Metalloprotease HflB (FtsH)
J. Bacteriol., November 15, 2007; 189(22): 8130 - 8138.
[Abstract] [Full Text] [PDF]


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Physiol. GenomicsHome page
K. Ganguly, T. Stoeger, S. C. Wesselkamper, C. Reinhard, M. A. Sartor, M. Medvedovic, C. R. Tomlinson, I. Bolle, J. M. Mason, G. D. Leikauf, et al.
Candidate genes controlling pulmonary function in mice: transcript profiling and predicted protein structure
Physiol Genomics, November 14, 2007; 31(3): 410 - 421.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
B. A. Tews and G. Meyers
The Pestivirus Glycoprotein Erns Is Anchored in Plane in the Membrane via an Amphipathic Helix
J. Biol. Chem., November 9, 2007; 282(45): 32730 - 32741.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
A. Bettegowda, J. Yao, A. Sen, Q. Li, K.-B. Lee, Y. Kobayashi, O. V. Patel, P. M. Coussens, J. J. Ireland, and G. W. Smith
JY-1, an oocyte-specific gene, regulates granulosa cell function and early embryonic development in cattle
PNAS, November 6, 2007; 104(45): 17602 - 17607.
[Abstract] [Full Text] [PDF]


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JCBHome page
D. Vercammen, W. Declercq, P. Vandenabeele, and F. Van Breusegem
Are metacaspases caspases?
J. Cell Biol., November 5, 2007; 179(3): 375 - 380.
[Abstract] [Full Text] [PDF]


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J. Lipid Res.Home page
T. Obermeyer, P. Fraisl, C. C. DiRusso, and P. N. Black
Topology of the yeast fatty acid transport protein Fat1p: mechanistic implications for functional domains on the cytosolic surface of the plasma membrane
J. Lipid Res., November 1, 2007; 48(11): 2354 - 2364.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
P. Zimmann, A. Steinbrugge, M. Schniederberend, K. Jung, and K. Altendorf
The Extension of the Fourth Transmembrane Helix of the Sensor Kinase KdpD of Escherichia coli Is Involved in Sensing
J. Bacteriol., October 15, 2007; 189(20): 7326 - 7334.
[Abstract] [Full Text] [PDF]


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BioinformaticsHome page
N. Fernandez-Fuentes, B. K. Rai, C. J. Madrid-Aliste, J. Eduardo Fajardo, and A. Fiser
Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments
Bioinformatics, October 1, 2007; 23(19): 2558 - 2565.
[Abstract] [Full Text] [PDF]


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BioinformaticsHome page
K. Borziak and I. B. Zhulin
FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes
Bioinformatics, October 1, 2007; 23(19): 2518 - 2521.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
S. Pukatzki, A. T. Ma, A. T. Revel, D. Sturtevant, and J. J. Mekalanos
Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin
PNAS, September 25, 2007; 104(39): 15508 - 15513.
[Abstract] [Full Text] [PDF]


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J. Virol.Home page
S. P. John, T. Wang, S. Steffen, S. Longhi, C. S. Schmaljohn, and C. B. Jonsson
Ebola Virus VP30 Is an RNA Binding Protein
J. Virol., September 1, 2007; 81(17): 8967 - 8976.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
V. A. Shchedrina, S. V. Novoselov, M. Yu. Malinouski, and V. N. Gladyshev
Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif
PNAS, August 28, 2007; 104(35): 13919 - 13924.
[Abstract] [Full Text] [PDF]


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BioinformaticsHome page
S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda, and T. Noguchi
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions
Bioinformatics, August 15, 2007; 23(16): 2046 - 2053.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
M. Yu, Y.-W. Faan, W. Y. K. Chung, and J. S. H. Tsang
Isolation and Characterization of a Novel Haloacid Permease from Burkholderia cepacia MBA4
Appl. Envir. Microbiol., August 1, 2007; 73(15): 4874 - 4880.
[Abstract] [Full Text] [PDF]


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GlycobiologyHome page
K. Julenius
NetCGlyc 1.0: prediction of mammalian C-mannosylation sites
Glycobiology, August 1, 2007; 17(8): 868 - 876.
[Abstract] [Full Text] [PDF]


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J. Virol.Home page
Y. Zhou, W.-P. Tzeng, W. Yang, Y. Zhou, Y. Ye, H.-w. Lee, T. K. Frey, and J. Yang
Identification of a Ca2+-Binding Domain in the Rubella Virus Nonstructural Protease
J. Virol., July 15, 2007; 81(14): 7517 - 7528.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
M. A. Ballicora, E. D. Erben, T. Yazaki, A. L. Bertolo, A. M. Demonte, J. R. Schmidt, M. Aleanzi, C. M. Bejar, C. M. Figueroa, C. M. Fusari, et al.
Identification of Regions Critically Affecting Kinetics and Allosteric Regulation of the Escherichia coli ADP-Glucose Pyrophosphorylase by Modeling and Pentapeptide-Scanning Mutagenesis
J. Bacteriol., July 15, 2007; 189(14): 5325 - 5333.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
Y.-H. Wong, T.-Y. Lee, H.-K. Liang, C.-M. Huang, T.-Y. Wang, Y.-H. Yang, C.-H. Chu, H.-D. Huang, M.-T. Ko, and J.-K. Hwang
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W588 - W594.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
N. Fernandez-Fuentes, C. J. Madrid-Aliste, B. K. Rai, J. E. Fajardo, and A. Fiser
M4T: a comparative protein structure modeling server
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W363 - W368.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
C. del Val, P. Ernst, M Falkenhahn, C. Fladerer, K. H. Glatting, S. Suhai, and A. Hotz-Wagenblatt
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W444 - W450.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
C.-T. Su, C.-Y. Chen, and C.-M. Hsu
iPDA: integrated protein disorder analyzer
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W465 - W472.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
A. Vos, N. Dekker, B. Distel, J. A. M. Leunissen, and F. Hochstenbach
Role of the Synthase Domain of Ags1p in Cell Wall {alpha}-Glucan Biosynthesis in Fission Yeast
J. Biol. Chem., June 29, 2007; 282(26): 18969 - 18979.
[Abstract] [Full Text] [PDF]


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Drug Metab. Dispos.Home page
J. M. Walraven, J. O. Trent, and D. W. Hein
Computational and Experimental Analyses of Mammalian Arylamine N-Acetyltransferase Structure and Function
Drug Metab. Dispos., June 1, 2007; 35(6): 1001 - 1007.
[Abstract] [Full Text] [PDF]


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J. Virol.Home page
B. J. Fenner, W. Goh, and J. Kwang
Dissection of Double-Stranded RNA Binding Protein B2 from Betanodavirus
J. Virol., June 1, 2007; 81(11): 5449 - 5459.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
K. Kaluzny, P. D. Abeyrathne, and J. S. Lam
Coexistence of Two Distinct Versions of O-Antigen Polymerase, Wzy-Alpha and Wzy-Beta, in Pseudomonas aeruginosa Serogroup O2 and Their Contributions to Cell Surface Diversity
J. Bacteriol., June 1, 2007; 189(11): 4141 - 4152.
[Abstract] [Full Text] [PDF]



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