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Bioinformatics Vol. 17 no. 12 2001
Pages 1240-1241
© 2001 Oxford University Press

Applications Note

ToolShop: prerelease inspections for protein structure prediction servers

Leszek Rychlewski

Bioinformatics Laboratory, BioInfoBank Institute, ul. Limanowskiego 24A, 60-744 Poznan, Poland

Received on May 8, 2001 ; revised on June 20, 2001 ; accepted on July 2, 2001

Summary: The ToolShop server offers a possibility to compare a protein tertiary structure prediction server with other popular servers before releasing it to the public. The comparison is conducted on a set of 203 proteins and the collected models are compared with over 20 other programs using various assessment procedures. The evaluation lasts ca one week.

Availability: The ToolShop server is available at http://BioInfo.PL/ToolShop/. The administrator should be contacted to couple the tested server to the evaluation suite.

Contact: leszek{at}bioinfo.pl

Supplementary information: The evaluation procedures are similar to those implemented in the continuous online server evaluation program, LiveBench. Additional information is available from its homepage (http://BioInfo.PL/LiveBench/).


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