Bioinformatics Vol. 17 no. 12 2001
Pages 1244-1245
© 2001 Oxford University Press
Applications Note |
MEGA2: molecular evolutionary genetics analysis software
1 Department of Biology, Arizona State
University, Tempe, AZ 85287-1501, USA
2 Department of Biological Sciences, Tokyo
Metropolitan University, 1-1 Minami-ohsawa, Hachioji-shi, Tokyo
192-0397, Japan
3 Department of Biology and the Institute of
Molecular Evolutionary Genetics, The Pennsylvania State University,
University Park, PA 16802, USA
Received on February 27, 2001
; revised on August 1, 2001
; accepted on August 4, 2001
Summary: We have developed a new software package, Molecular Evolutionary Genetics Analysis version 2 (MEGA2), for exploring and analyzing aligned DNA or protein sequences from an evolutionary perspective. MEGA2 vastly extends the capabilities of MEGA version 1 by: (1) facilitating analyses of large datasets; (2) enabling creation and analyses of groups of sequences; (3) enabling specification of domains and genes; (4) expanding the repertoire of statistical methods for molecular evolutionary studies; and (5) adding new modules for visual representation of input data and output results on the Microsoft Windows platform.
Availability: http://www.megasoftware.net.
Contact: s.kumar{at}asu.edu
* To whom correspondence should be addressed.
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 L.-R. Zeng, C. H. Park, R.C. Venu, J. Gough, and G.-L. Wang Classification, Expression Pattern, and E3 Ligase Activity Assay of Rice U-Box-Containing Proteins Mol Plant, September 1, 2008; 1(5): 800 - 815. [Abstract] [Full Text] [PDF]
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 G. J. Colbeck, H. L. Gibbs, P. P. Marra, K. Hobson, and M. S. Webster Phylogeography of a Widespread North American Migratory Songbird (Setophaga ruticilla) J. Hered., September 1, 2008; 99(5): 453 - 463. [Abstract] [Full Text] [PDF]
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S. G. Dastager, J.-C. Lee, Y.-J. Ju, D.-J. Park, and C.-J. Kim Rubellimicrobium mesophilum sp. nov., a mesophilic, pigmented bacterium isolated from soil Int J Syst Evol Microbiol, August 1, 2008; 58(8): 1797 - 1800. [Abstract] [Full Text] [PDF]
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P. Garcia-Fraile, E. Velazquez, P. F. Mateos, E. Martinez-Molina, and R. Rivas Cohnella phaseoli sp. nov., isolated from root nodules of Phaseolus coccineus in Spain, and emended description of the genus Cohnella Int J Syst Evol Microbiol, August 1, 2008; 58(8): 1855 - 1859. [Abstract] [Full Text] [PDF]
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Y. Tang, G. Zhou, L. Zhang, J. Mao, X. Luo, M. Wang, and C. Fang Aeromicrobium flavum sp. nov., isolated from air Int J Syst Evol Microbiol, August 1, 2008; 58(8): 1860 - 1863. [Abstract] [Full Text] [PDF]
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K. K. Kim, K. C. Lee, H.-M. Oh, M. J. Kim, M. K. Eom, and J.-S. Lee Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage Int J Syst Evol Microbiol, August 1, 2008; 58(8): 1916 - 1921. [Abstract] [Full Text] [PDF]
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S. G. Dastager, J.-C. Lee, Y.-J. Ju, D.-J. Park, and C.-J. Kim Leifsonia bigeumensis sp. nov., isolated from soil on Bigeum Island, Korea Int J Syst Evol Microbiol, August 1, 2008; 58(8): 1935 - 1938. [Abstract] [Full Text] [PDF]
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L. M. Turner, E. B. Chuong, and H. E. Hoekstra Comparative Analysis of Testis Protein Evolution in Rodents Genetics, August 1, 2008; 179(4): 2075 - 2089. [Abstract] [Full Text] [PDF]
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J. A Cowing, C. A Arrese, W. L Davies, L. D Beazley, and D. M Hunt Cone visual pigments in two marsupial species: the fat-tailed dunnart (Sminthopsis crassicaudata) and the honey possum (Tarsipes rostratus) Proc R Soc B, July 7, 2008; 275(1642): 1491 - 1499. [Abstract] [Full Text] [PDF]
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C. Thawai, S. Tanasupawat, and T. Kudo Micromonospora pattaloongensis sp. nov., isolated from a Thai mangrove forest Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1516 - 1521. [Abstract] [Full Text] [PDF]
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A. B. Arun, P. Schumann, H.-I Chu, C.-C. Tan, W.-M. Chen, W.-A. Lai, P. Kampfer, F.-T. Shen, P. D. Rekha, M.-H. Hung, et al. Pseudoxanthobacter soli gen. nov., sp. nov., a nitrogen-fixing alphaproteobacterium isolated from soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1571 - 1575. [Abstract] [Full Text] [PDF]
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K. K. Kim, K. C. Lee, H.-M. Oh, and J.-S. Lee Microbacterium aquimaris sp. nov., isolated from seawater Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1616 - 1620. [Abstract] [Full Text] [PDF]
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B. Gomez-Gil, E. Fajer-Avila, J. Pascual, M. C. Macian, M. J. Pujalte, E. Garay, and A. Roque Vibrio sinaloensis sp. nov., isolated from the spotted rose snapper, Lutjanus guttatus Steindachner, 1869 Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1621 - 1624. [Abstract] [Full Text] [PDF]
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P. Kampfer, E. Falsen, and H.-J. Busse Naxibacter varians sp. nov. and Naxibacter haematophilus sp. nov., and emended description of the genus Naxibacter Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1680 - 1684. [Abstract] [Full Text] [PDF]
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 S. Kumar, M. Nei, J. Dudley, and K. Tamura MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences Brief Bioinform, July 1, 2008; 9(4): 299 - 306. [Abstract] [Full Text] [PDF]
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G. Palacios, J. Hui, P. L. Quan, A. Kalkstein, K. S. Honkavuori, A. V. Bussetti, S. Conlan, J. Evans, Y. P. Chen, D. vanEngelsdorp, et al. Genetic Analysis of Israel Acute Paralysis Virus: Distinct Clusters Are Circulating in the United States J. Virol., July 1, 2008; 82(13): 6209 - 6217. [Abstract] [Full Text] [PDF]
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 L. Feng, B. Liu, Y. Liu, Y. A. Ratiner, B. Hu, D. Li, X. Zong, W. Xiong, and L. Wang A Genomic Islet Mediates Flagellar Phase Variation in Escherichia coli Strains Carrying the Flagellin-Specifying Locus flk J. Bacteriol., July 1, 2008; 190(13): 4470 - 4477. [Abstract] [Full Text] [PDF]
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 S. Tian, L.-C. Luo, S. Ge, and Z.-Y. Zhang Clear Genetic Structure of Pinus kwangtungensis (Pinaceae) Revealed by a Plastid DNA Fragment with a Novel Minisatellite Ann. Bot., July 1, 2008; 102(1): 69 - 78. [Abstract] [Full Text] [PDF]
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 L. Gomez-Alpizar, C.-H. Hu, R. Oliva, G. Forbes, and J. B. Ristaino Phylogenetic relationships of Phytophthora andina, a new species from the highlands of Ecuador that is closely related to the Irish potato famine pathogen Phytophthora infestans Mycologia, July 1, 2008; 100(4): 590 - 602. [Abstract] [Full Text] [PDF]
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 F. R. Jackson, A. S. Turmelle, D. M. Farino, R. Franka, G. F. McCracken, and C. E. Rupprecht EXPERIMENTAL RABIES VIRUS INFECTION OF BIG BROWN BATS (EPTESICUS FUSCUS) J. Wildl. Dis., July 1, 2008; 44(3): 612 - 621. [Abstract] [Full Text] [PDF]
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 L. Bermudez, U. Urias, D. Milstein, L. Kamenetzky, R. Asis, A. R. Fernie, M. A. Van Sluys, F. Carrari, and M. Rossi A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit J. Exp. Bot., July 1, 2008; 59(10): 2875 - 2890. [Abstract] [Full Text] [PDF]
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 J. Segales, A. Olvera, L. Grau-Roma, C. Charreyre, H. Nauwynck, L. Larsen, K. Dupont, K. McCullough, J. Ellis, S. Krakowka, et al. PCV-2 genotype definition and nomenclature Vet Rec., June 28, 2008; 162(26): 867 - 868. [Full Text] [PDF]
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J. Wiese, Y. Jiang, S.-K. Tang, V. Thiel, R. Schmaljohann, L.-H. Xu, C.-L. Jiang, and J. F. Imhoff A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1324 - 1331. [Abstract] [Full Text] [PDF]
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W.-J. Li, Y.-Q. Zhang, P. Schumann, H.-Y. Liu, L.-Y. Yu, Y.-Q. Zhang, E. Stackebrandt, L.-H. Xu, and C.-L. Jiang Nesterenkonia halophila sp. nov., a moderately halophilic, alkalitolerant actinobacterium isolated from a saline soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1359 - 1363. [Abstract] [Full Text] [PDF]
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R. Liu, H. Liu, H. Feng, X. Wang, C.-X. Zhang, K.-Y. Zhang, and R. Lai Pseudomonas duriflava sp. nov., isolated from a desert soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1404 - 1408. [Abstract] [Full Text] [PDF]
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P. Kampfer, A. Sessitsch, M. Schloter, B. Huber, H.-J. Busse, and H. C. Scholz Ochrobactrum rhizosphaerae sp. nov. and Ochrobactrum thiophenivorans sp. nov., isolated from the environment Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1426 - 1431. [Abstract] [Full Text] [PDF]
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R. Liu, H. Liu, C.-X. Zhang, S.-Y. Yang, X.-H. Liu, K.-Y. Zhang, and R. Lai Sphingobacterium siyangense sp. nov., isolated from farm soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1458 - 1462. [Abstract] [Full Text] [PDF]
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P. J. Lupo, R. C. Langer-Curry, M. Robinson, P. C. Okhuysen, and C. L. Chappell Cryptosporidium muris in a Texas Canine Population Am J Trop Med Hyg, June 1, 2008; 78(6): 917 - 921. [Abstract] [Full Text] [PDF]
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E. Meleg, K. Banyai, V. Martella, B. Jiang, B. Kocsis, P. Kisfali, B. Melegh, and G. Szucs Detection and Quantification of Group C Rotaviruses in Communal Sewage Appl. Envir. Microbiol., June 1, 2008; 74(11): 3394 - 3399. [Abstract] [Full Text] [PDF]
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