Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (16)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Nielsen, H. B.
Right arrow Articles by Knudsen, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Nielsen, H. B.
Right arrow Articles by Knudsen, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 18 no. 2 2002
Pages 321-322
© 2002 Oxford University Press

Applications Note

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays

H. B. Nielsen and S. Knudsen

Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Building 208, 2800 Lyngby, Denmark

Received on July 5, 2001 ; revised on October 10, 2001 ; accepted on October 19, 2001

Summary: PROBEWIZ designs PCR primers for amplifying probes for cDNA arrays. The probes are designed to have minimal homology to other expressed sequences from a given organism. The primer selection is based on user-defined penalties for homology, primer quality, and proximity to the 3'end.

Availability: PROBEWIZ is accessible from http://www.cbs.dtu.dk/services/DNAarray/probewiz.html

Contact: hbjorn{at}cbs.dtu.dk; steen{at}cbs.dtu.dk


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 J. Virol.Home page
S. S. Jiang, I-S. Chang, L.-W. Huang, P.-C. Chen, C.-C. Wen, S.-C. Liu, L.-C. Chien, C.-Y. Lin, C. A. Hsiung, and J.-L. Juang
Temporal Transcription Program of Recombinant Autographa californica Multiple Nucleopolyhedrosis Virus.
J. Virol., September 1, 2006; 80(18): 8989 - 8999.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
H. Hyyro, M. Juhola, and M. Vihinen
Genome-wide selection of unique and valid oligonucleotides
Nucleic Acids Res., July 26, 2005; 33(13): e115 - e115.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. M. K. Gordon and C. W. Sensen
Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays
Nucleic Acids Res., September 29, 2004; 32(17): e133 - e133.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
X. Wang and B. Seed
A PCR primer bank for quantitative gene expression analysis
Nucleic Acids Res., December 15, 2003; 31(24): e154 - e154.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. A. Haas, M. Hild, A. P. H. Wright, T. Hain, D. Talibi, and M. Vingron
Genome-scale design of PCR primers and long oligomers for DNA microarrays
Nucleic Acids Res., October 1, 2003; 31(19): 5576 - 5581.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. J. Emrich, M. Lowe, and A. L. Delcher
PROBEmer: a web-based software tool for selecting optimal DNA oligos
Nucleic Acids Res., July 1, 2003; 31(13): 3746 - 3750.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.