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Bioinformatics Vol. 18 no. 2 2002
Pages 374-375
© 2002 Oxford University Press

Applications Note

Interactive InterPro-based comparisons of proteins in whole genomes

A. Kanapin *, R. Apweiler , M. Biswas , W. Fleischmann , Y. Karavidopoulou , P. Kersey , E. V. Kriventseva , V. Mittard , N. Mulder , T. Oinn , I. Phan , F. Servant and E. Zdobnov

EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK

Received on March 2, 2001 ; revised on September 27, 2001 ; accepted on September 27, 2001

Motivation: The SWISS-PROT group at the EBI has developed the Proteome Analysis Database utilizing existing resources and providing comprehensive and integrated comparative analysis of the predicted protein coding sequencesof the complete genomes of bacteria, archaea and eukaryotes. The Proteome Analysis Database is accompanied by a program that has been designed to carry out interactive InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database.

Availability: http://www.ebi.ac.uk/proteome/comparisons.html

Contact: alex{at}ebi.ac.uk; proteome{at}ebi.ac.uk

* To whom all correspondence should be addressed.


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