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Bioinformatics Vol. 19 no. 1 2003
Pages 155-156
© 2003 Oxford University Press

Applications Note

An extensible application for assembling annotation for genomic data

Jianhua Zhang *, Vincent Carey and Robert Gentleman

Department of Biostatistical Science, Dana-Farber Cancer Institute, Harvard School of Public Health, and Channing Laboratory, Boston, MA, USA

Received on May 2, 2002 ; revised on July 19, 2002 ; accepted on July 24, 2002

Summary: AnnBuilder is an R package for assembling genomic annotation data. The system currently provides parsers to process annotation data from LocusLink, Gene Ontology Consortium, and Human Gene Project and can be extended to new data sources via user defined parsers. AnnBuilder differs from other existing systems in that it provides users with unlimited ability to assemble data from user selected sources. The products of AnnBuilder are files in XML format that can be easily used by different systems.

Availability: (http://www.bioconductor.org). Open source.

Contact: jzhang{at}jimmy.harvard.edu

* To whom correspondence should be addressed.


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