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Bioinformatics Vol. 19 no. 1 2003
Pages 159-160
© 2003 Oxford University Press

Applications Note

XdomView: protein domain and exon position visualization

Gopalan Vivek 1, Tin Wee Tan 1 and Shoba Ranganathan 1,2,*

1 Department of Biochemistry
2 Department of Biological Sciences, National University of Singapore, Singapore 119260

Received on April 17, 2002 ; revised on June 28, 2002 ; accepted on July 9, 2002

Summary: The relationship between intron distribution in the eukaryotic gene and protein structural elements is essential for understanding the origin and evolution of genes. XdomView is a web-based viewer mapping protein structural domains and intron positions in eukaryotic homologues to its tertiary structure. The association of sequence signals to 3D structure in XdomView provides a valuable visualization environment for eukaryotic gene organization, gene evolution, protein folding and protein structure classification.

Availability: Freely available from http://surya.bic.nus.edu.sg/xdom

Contact: shoba{at}bic.nus.edu.sg

* To whom correspondence should be addressed.


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