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Bioinformatics Vol. 19 no. 1 2003
Pages 167-168
© 2003 Oxford University Press

Applications Note

Detection of hydrogen-bond signature patterns in protein families

Tejasvini Prasad , M. N. Prathima and Nagasuma Chandra *

Bioinformatics Centre, Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560012, India

Received on January 26, 2002 ; revised on July 8, 2002 ; accepted on August 2, 2002

Summary: We have developed a WWW server, HBPRINT, for the identification of hydrogen–bond signature patterns in protein families from their structures. The server calculates (a) common hydrogen bonds between two structures (b) a hydrogen-bond fingerprint in a set of structural neighbours and (c) details of conserved hydrogen bonds. The server also enables the visualization of the hydrogen bond network comprising the signature pattern.

Availability: HBPRINT and a tutorial are available from http://144.16.93.115/hb_page/index.html

Contact: nchandra{at}physics.iisc.ernet.in

* To whom correspondence should be addressed.


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