Bioinformatics Vol. 19 no. 11 2003
Pages 1441-1442
© 2003 Oxford University Press
Applications Note |
GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana
Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, D-50829 Koeln, Germany
Received on December 19, 2002
; revised on February 17, 2003
; accepted on February 20, 2003
Summary: GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project. Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived. A web interface permits text-based as well as sequence-based searches for relevant insertions. GABI-Kat SimpleSearch aims to help biologists to quickly find T-DNA insertion mutants for their research.
Availability: http://www.mpiz-koeln.mpg.de/GABI-Kat/
Contact: weisshaa{at}mpiz-koeln.mpg.de
* To whom correspondence should be addressed.
Present address: Max Planck Unit for
Structural Molecular Biology, Notkestrasse 85, D-22607
Hamburg, Germany.
Present address: Bielefeld University, Faculty
of Biology, PO Box, D-33501 Bielefeld, Germany.
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