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Bioinformatics Vol. 19 no. 11 2003
Pages 1446-1448
© 2003 Oxford University Press

Applications Note

POAVIZ: a Partial Order Multiple Sequence Alignment Visualizer

Catherine Grasso , Michael Quist , Kevin Ke and Christopher Lee *

Molecular Biology Institute, Center for Genomics and Proteomics, Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095-1570, USA

Received on October 3, 2002 ; revised on February 7, 2003 ; accepted on February 14, 2003

Summary: POAVIZ creates a visualization of a multiple sequence alignment that makes clear the overall structure of how sequences match and diverge in the alignment. POAVIZ can construct visualizations from any multiple sequence alignment source (e.g. PIR and CLUSTAL formats), and is valuable for revealing complex branching structure (such as domains, large-scale insertions / deletions or recombinations), especially in partnership with the Partial Order Alignment (POA) multiple sequence alignment program.

Availability: The Partial Order multiple sequence Alignment Visualizer (POAVIZ) program is available at http://www.bioinformatics.ucla.edu/poa

Contact: leec{at}mbi.ucla.edu

* To whom correspondence should be addressed.


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