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Bioinformatics Vol. 19 no. 12 2003
Pages 1594-1595
© 2003 Oxford University Press

Applications Note

Digital extractor: analysis of digital differential display output

Stephen F. Madden 1, Barry O’Donovan 2, Simon J. Furney 1, Hugh R. Brady 1, Guenole Silvestre 2 and Peter P. Doran 1,*

1 Human Genomics and Bioinformatics Research Unit, Department of Medicine and Therapeutics, University College Dublin, Mater Misericordiae Hospital, The Dublin Molecular Medicine Centre, 41 Eccles St, Dublin 7, Ireland
2 Department of Computer Science, University College Dublin, Belfield, Dublin 4, Ireland

Received on June 24, 2002 ; accepted on March 3, 2003

Summary: Digital Extractor is a program for the high-throughput processing of data sets derived from digital differential display-based comparisons of EST libraries. These comparisons can be utilized to identify discrete subsets of genes whose expression is restricted to distinct tissue types. The program facilitates these investigations by permitting parallel annotation of genes identified as being differentially expressed.

Availability: The executable program, suitable for use on all UNIX-based platforms is freely available to non-profit users.

Contact: pdoran.genome{at}mater.ie

* To whom correspondence should be addressed.


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