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Bioinformatics Vol. 19 no. 18 2003
pages 2477-2479
© 2003 Oxford University Press

Applications Note

gff2aplot: Plotting sequence comparisons

Josep F. Abril 1,*, Roderic Guigó 1 and Thomas Wiehe 2,{dagger}

1 Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica (IMIM) Universitat Pompeu Fabra (UPF)—Centre de Regulació Genòmica (CRG), Passeig Marítim de la Barceloneta 37–49, 08003 Barcelona, Catalonia, Spain and 2 Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany

Received on March 4, 2003 ; revised on June 11, 2003 ; accepted on June 20, 2003

Summary: gff2aplot is a program to visualize the alignment of two sequences together with their annotations. Input for the program consists of single or multiple files in GFF-format which specify the alignment coordinates and annotation features of both sequences. Output is in PostScript format of any size. The features to be displayed are highly customizable to meet user specific needs. The program serves to generate print-quality images for comparative genome sequence analysis.

Availability: gff2aplot is freely available under the GNU software licence and can be downloaded from the address specified below.

Supplementary information: http://genome.imim.es/software/gfftools/GFF2APLOT.html

Contact: jabril{at}imim.es

* To whom correspondence should be addressed.

{dagger} Current Address: Universität zu Köln, Institut für Genetik, Weyertal 121, 50931 Köln, Germany.


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