Bioinformatics Vol. 19 no. 18 2003
pages 2496-2497
© 2003 Oxford University Press
Applications Note |
DnaSP, DNA polymorphism analyses by the coalescent and other methods
1 Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08071 Barcelona, Spain and 2 Departament de Llenguatges i Sistemes Informàtics, Universitat Politècnica de Catalunya, Barcelona, Spain
Received on February 28, 2003
; revised on June 6, 2003
; accepted on July 8, 2003
Summary: DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (
5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results.
Availability: The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp
Contact: jrozas{at}ub.edu
* To whom correspondence should be addressed.
Present address: Departament de Tecnología, Universitat Pompeu Fabra, Barcelona, Spain.
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