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Bioinformatics Vol. 19 no. 2 2003
Pages 299-300
© 2003 Oxford University Press

Applications Note

RnaViz 2: an improved representation of RNA secondary structure

Peter De Rijk *, Jan Wuyts and Rupert De Wachter

Departement Biomedische Wetenschappen, Universiteit Antwerpen (UIA), Universiteitsplein 1, B-2610 Antwerpen, Belgium

Received on July 10, 2002 ; revised on August 21, 2002 ; accepted on August 22, 2002

Summary: RnaViz has been developed to easily create nice, publication quality drawings of RNA secondary structure. RnaViz 2 supports CT, DCSE, and RNAML input formats and improves on many aspects of the first version, notably portability and structure annotation. RnaViz is written using a hybrid programming approach combining pieces written in C and in the scripting language Tcl/Tk, making the program very portable and extensible.

Availability: Source code, binaries for Linux and MS Windows, and additional documentation are available athttp://rrna.uia.ac.be/rnaviz/

Contact: derijkp{at}uia.ua.ac.be

* To whom correspondence should be addressed.


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