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Bioinformatics Advance Access originally published online on April 8, 2004
Bioinformatics 2004 20(15):2463-2465; doi:10.1093/bioinformatics/bth251
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Bioinformatics 20(15) © Oxford University Press 2004; all rights reserved.

Applications Note

Pedro: a configurable data entry tool for XML

Kevin L. Garwood 1,*, Chris F. Taylor 3, Kai J. Runte 3, Andy Brass 1,2, Stephen G. Oliver 2 and Norman W. Paton 1

1 Department of Computer Science and 2 School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK and 3 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK

Received on November 14, 2003; revised on February 13, 2004; accepted on March 16, 2004
Advance Access Publication April 8, 2004

Summary: Pedro is a JavaTM application that dynamically generates data entry forms for data models expressed in XML Schema, producing XML data files that validate against this schema. The software uses an intuitive tree-based navigation system, can supply context-sensitive help to users and features a sophisticated interface for populating data fields with terms from controlled vocabularies. The software also has the ability to import records from tab delimited text files and features various validation routines.

Availability: The application, source code, example models from several domains and tutorials can be downloaded from http://pedro.man.ac.uk/

Contact: garwood{at}cs.man.ac.uk

* To whom correspondence should be addressed.


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