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Bioinformatics Advance Access originally published online on May 6, 2004
Bioinformatics 2004 20(16):2863-2864; doi:10.1093/bioinformatics/bth301
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Bioinformatics vol. 20 issue 16 © Oxford University Press 2004; all rights reserved.

Applications Note

Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies

W. H. Lee * and V. B. Vega

Genome Institute of Singapore, Information and Mathematical Sciences, Singapore, Singapore 138672

Received on March 10, 2004; revised on April 15, 2004; accepted on April 21, 2004
Advance Access Publication May 6, 2004

Summary: A modification to Phred and program to detect heterogeneous positions, which is particularly useful in the identification of mutations and other abnormalities in Phred/Phrap genome assemblies.

Availability: The package is made available at http://giscompute.gis.a-star.edu.sg/~charlie/DHetero.html

Contact: leewhc{at}gis.a-star.edu.sg

* To whom correspondence should be addressed.


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