Skip Navigation


Bioinformatics Advance Access originally published online on May 14, 2004
Bioinformatics 2004 20(16):2869-2871; doi:10.1093/bioinformatics/bth307
This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow All Versions of this Article:
20/16/2869    most recent
bth307v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (4)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Bidaut, G.
Right arrow Articles by Ochs, M. F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Bidaut, G.
Right arrow Articles by Ochs, M. F.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics vol. 20 issue 16 © Oxford University Press 2004; all rights reserved.

Applications Note

ClutrFree: cluster tree visualization and interpretation

Ghislain Bidaut 1,2 and Michael F. Ochs 1,*

1 Division of Population Science, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA and 2 Structural and Genomic Information Laboratory, CNRS-UPR 2589, 13402 Marseille, France

Received on September 29, 2003; revised on March 24, 2004; accepted on April 28, 2004
Advance Access Publication May 14, 2004

Summary: ClutrFree facilitates the visualization and interpretation of clusters or patterns computed from microarray data through a graphical user interface that displays patterns, membership information of the genes and annotation statistics simultaneously. ClutrFree creates a tree linking the patterns based on similarity, permitting the navigation among patterns identified by different algorithms or by the same algorithm with different parameters, and aids the inferring of conclusions from a microarray experiment.

Availability: The ClutrFree Java source code and compiled bytecode are available as a package under the GNU General Public License at http://bioinformatics.fccc.edu

Supplementary information: Extended documentation on the software usage, as well as supplemental figures and an appropriate test dataset are provided on the website.

Contact: Ghislain.Bidaut{at}fccc.edu; Michael.Ochs{at}fccc.edu

* To whom correspondence should be addressed.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.