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Bioinformatics Advance Access originally published online on May 14, 2004
Bioinformatics 2004 20(16):2883-2885; doi:10.1093/bioinformatics/bth321
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Bioinformatics vol. 20 issue 16 © Oxford University Press 2004; all rights reserved.

Applications Note

GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers

P. D'Addabbo , L. Lenzi , F. Facchin , R. Casadei , S. Canaider , L. Vitale , F. Frabetti , P. Carinci , M. Zannotti and P. Strippoli *

Center for Research into Molecular Genetics ‘Fondazione CARISBO’, Institute of Histology and General Embriology, University of Bologna, Via Belmeloro, 8-40126 Bologna, Italy

Received on December 23, 2003; revised on March 24, 2004; accepted on May 2, 2004
Advance Access Publication May 14, 2004

Summary: Extracting the desired data from a database entry for later analysis is a constant need in the biological sequence analysis community; GeneRecords 1.0 is a solution for GenBank biological flat file parsing, as it implements a structured representation of each feature and feature qualifier in GenBank following import in a common database managing system usable in a personal computer (Macintosh and Windows environments). This collection of related databases enables the local management of GenBank records, allowing indexing, retrieval and analysis of both information and sequences on a personal computer.

Availability: the current release, including the FileMaker Pro runtime application (built for Windows and Macintosh environments), is freely available at http://apollo11.isto.unibo.it/software/

Contact: pierluigi.strippoli{at}unibo.it

* To whom correspondence should be addressed.


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L. Lenzi, F. Frabetti, F. Facchin, R. Casadei, L. Vitale, S. Canaider, P. Carinci, M. Zannotti, and P. Strippoli
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[Abstract] [Full Text] [PDF]


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