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Bioinformatics Advance Access originally published online on June 16, 2004
Bioinformatics 2004 20(17):3241-3243; doi:10.1093/bioinformatics/bth341
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Bioinformatics vol. 20 issue 17 © Oxford University Press 2004; all rights reserved.

Applications Note

GOLDsurfer: three dimensional display of linkage disequilibrium

Fredrik Pettersson 1,*, Oskar Jonsson 2 and Lon R. Cardon 3

1 Department of Organic Chemistry, Umeä University, Sweden, 2 Umbio AB, Umeä, Sweden and 3 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK

Received on February 2, 2004; revised on March 31, 2004; accepted on May 26, 2004
Advance Access Publication June 16, 2004

Summary: GOLDsurfer is a java-based analysis and graphics program for three-dimensional plotting of linkage disequilibrium (LD). Simultaneous presentation of LD measures, including recombination rate estimates and disease association statistics, helps to clarify LD patterns and facilitates interpretations based on multiple indices of local genetic data.

Availability: GOLDsurfer is available at www.umbio.com and is embedded with the Evince graphical software package.

Contact: fredrik.pettersson{at}chem.umu.se

* To whom correspondence should be addressed.


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