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Bioinformatics Advance Access originally published online on July 15, 2004
Bioinformatics 2004 20(18):3641-3642; doi:10.1093/bioinformatics/bth396
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Bioinformatics vol. 20 issue 18 © Oxford University Press 2004; all rights reserved.

Applications Note

Importing MAGE-ML format microarray data into BioConductor

Steffen Durinck 1,*, Joke Allemeersch 1, Vincent J. Carey 2, Yves Moreau 1,3 and Bart De Moor 1

1 Department of Electronical Engineering, ESAT-SCD, K.U. Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium, 2 Channing Laboratory, Brigham and Women's Hospital, 75 Francis Street, Boston, MA 02115, USA and 3 On leave at Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Kemitorvet, Building 208, 2800, Lyngby, Denmark

Received on March 1, 2004; revised on May 17, 2004; accepted on June 29, 2004
Advance Access Publication July 9, 2004

The microarray gene expression markup language (MAGE-ML) is a widely used XML (eXtensible Markup Language) standard for describing and exchanging information about microarray experiments. It can describe microarray designs, microarray experiment designs, gene expression data and data analysis results. We describe RMAGEML, a new Bioconductor package that provides a link between cDNA microarray data stored in MAGE-ML format and the Bioconductor framework for preprocessing, visualization and analysis of microarray experiments.

Availability: http://www.bioconductor.org. Open Source

Contact: joke.allemeersch{at}esat.kuleuven.ac.be

* To whom correspondence should be addressed.


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