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Bioinformatics Advance Access originally published online on January 22, 2004
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Bioinformatics 20(4) © Oxford University Press 2004; all rights reserved.

Applications Note

ChromoWheel: a new spin on eukaryotic chromosome visualization

Sven Ekdahl and Erik L. L. Sonnhammer *

Center for Genomics and Bioinformatics, Karolinska Institutet, S-17177 Stockholm, Sweden

Received on June 17, 2003 ; revised on July 25, 2003 ; accepted on September 25, 2003
Advance Access Publication January 22, 2004

Summary: ChromoWheel is an Internet browser application for generating whole-genome illustrations. It can be used to depict chromosomes, genes and relations between chromosomal loci. The circular layout of chromosomes is advantageous for showing relationships between different chromosomes, as the connecting line never crosses over a chromosome. All graphical image components are in the vector-based format Scalable Vector Graphics, which are highly scaleable and admit user interaction. ChromoWheel can either be run with user-provided data in the generic SFS format, or as a browser front-end for precompiled genomic data.

Availability: http://chromowheel.cgb.ki.se

Contact: Erik.Sonnhammer{at}cgb.ki.se

* To whom correspondence should be addressed.


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