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Bioinformatics Advance Access originally published online on February 5, 2004
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Bioinformatics 20(6) © Oxford University Press 2004; all rights reserved.

Applications Note

PDBSprotEC: a Web-accessible database linking PDB chains to EC numbers via SwissProt

Andrew C.R. Martin *

School of Animal and Microbial Science, The University of Reading, Whiteknights, PO Box 228, Reading RG6 6AJ, UK

Received on July 29, 2003 ; revised on October 2, 2003 ; accepted on November 15, 2003
Advance Access Publication February 5, 2004

Summary: A mapping between chains in the Protein Databank and Enzyme Classification numbers is invaluable for research into structure–function relationships. Mapping at the chain level is a non-trivial problem and we present an automatically updated Web-server, which provides this link in a queryable form and as a downloadable XML or flat file.

Availability: The query interface and downloadable files may be accessed at http://www.bioinf.org.uk/pdbsprotec/

Supplementary information: Further details of the methods used are available at http://www.bioinf.org.uk/pdbsprotec/methods/

Contact: andrew{at}bioinf.org.uk

* Present address: Department of Biochemistry and Molecular Biology, Darwin Building, University College London, Gower Street, London WCIE 6BT.


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