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Bioinformatics Advance Access originally published online on February 10, 2004
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Bioinformatics 20(8) © Oxford University Press 2004; all rights reserved.

Applications Note

CVD: the intestinal crypt/villus in situ hybridization database

Line Olsen 1, Morten Hansen 1, Claus T. Ekstrøm 2, Jesper T. Troelsen 1 and Jørgen Olsen 1,*

1 Department of Medical Biochemistry and Genetics, Biochemistry Laboratory C and 2 Department of Biostatistics, Institute of Public Health, University of Copenhagen, The Panum Institute, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark

Received on August 14, 2003; accepted on October 19, 2003
Advance Access Publication February 10, 2004

Summary: The intestinal crypt/villus in situ hybridization database (CVD) query interface is a web-based tool to search for genes with similar relative expression patterns along the crypt/villus axis of the mammalian intestine. The CVD is an online database holding information for relative gene expression patterns in the mammalian intestine and is based on the scoring of in situ hybridization experiments reported in the literature. CVD contains expression data for 88 different genes collected from 156 different in situ hybridization profiles. The web-based query interface allows execution of both single gene queries and pattern searches. The query results provide links to the most relevant public gene databases.

Availability: http://pc113.imbg.ku.dk/ps/

Contact: jolsen{at}imbg.ku.dk

* To whom correspondence should be addressed.


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